PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g01110
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 356aa    MW: 40650.1 Da    PI: 10.011
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g01110genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002181103223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +C+ Cgk F+    L++H ++ H
  Tp3g01110  81 RCEECGKGFRYEKCLTKHRQVmH 103
                7*****************99877 PP
2zf-C2H211.30.0011314336123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C  C+++Fs+   L  H+ +H
  Tp3g01110 314 HRCRLCDRVFSTYQALGGHQTMH 336
                79****************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.11380108IPR007087Zinc finger, C2H2
SMARTSM003550.04380103IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.84E-780102No hitNo description
Gene3DG3DSA:3.30.160.601.3E-482104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028082103IPR007087Zinc finger, C2H2
SuperFamilySSF576673.84E-7309336No hitNo description
SMARTSM003550.055314336IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.224314341IPR007087Zinc finger, C2H2
PfamPF139121.6E-7314337IPR007087Zinc finger, C2H2
PROSITE patternPS000280316336IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MASMEDHKEF EKPIFELRHM KFRSSRVLVT RKKKNRLGES MNHYEEVYCY YGLREIPKRS  60
QKSQLDDRLG TRTRNKKRLI RCEECGKGFR YEKCLTKHRQ VMHTLKQKKS DSEESTRSDL  120
LCRFIGVQRR KRSKRVSRYK KNPRVSASSS SSSSFTSFPV SEDDGELLEV AESLILLSKS  180
GGEALVSNAE MNLREFEDGF LGNEQKLVGE SKDGSLSNEH KPVGISNESD GTSKGLLGFL  240
GDKKAMKVDE SCQLKQVGGA GSFREQVGLE RVSLDDRPGL MLQTAETDIK HKLDGQETAF  300
EDTNSGNKGF QMKHRCRLCD RVFSTYQALG GHQTMHRMGN KSEKLKHEMQ TRVNRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g01110
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408453.21e-139LOW QUALITY PROTEIN: uncharacterized protein LOC18023566
TrEMBLV4NT631e-138V4NT63_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006408453.11e-139(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.12e-27C2H2 family protein