PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GRAS

Protein Properties

Length: 600aa MW: 65791.8 Da PI: 4.4358

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g29910	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	363.2	3.6e-111	234	600	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 +++++cA+ ++s d a ++L r++e +s+ gdp++R+ +yfteAL + l+ ++++ + s +++e + ++k++++++P+ kf+hltaNqaI Tp2g29910 234 RAIYHCARILES-DSDDAAKALVRIRESVSEIGDPTERVGFYFTEALCTGLSP------DSVTKDSPSAATVEELTLSYKTLNDACPYSKFAHLTANQAI 326 7899**8887.6677778899*************************9......55555555556699*********************** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 lea+e+++ +Hi+Df+i qG+QWpaL+qaLa+R++g+p ++R+ g+ +p+ g + +l +tg+rL++fA+ l+++f+f + + + ++ l+ +++rv+p+ Tp2g29910 327 LEATENSSNLHIVDFGIVQGIQWPALFQALATRSSGKPtRVRVSGIPAPSLGesPELSLIATGNRLRDFAKVLDLNFDFIP-ILTPIHLLDGSSFRVDPD 425 ******************************77776******999878888999****************.799*********** PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 E+laVn++lql++llde+ ++ + + L+l +sl+P vv++ e e+++n+ F++r+ +al++ysa+f+sle +++r+seer+ vEr+l+gr+i+ ++ Tp2g29910 426 EVLAVNFMLQLYKLLDETPTIVD---TALRLARSLNPMVVTLGEYEVSLNRVGFATRVKNALRFYSAVFESLEPNMGRDSEERVRVERVLFGRRISGLIG 522 ***********99999999...********************************************************************** PP GRAS 300 cegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374 e + +rer+e +e+Wr +e+aGF++v+ls++a++qak ll +++ s+ y++ e++ ++ l W+d pL+++S+Wr Tp2g29910 523 PEITGnQRERMEDKEQWRVLMENAGFEAVKLSNYAVSQAKILLWNCNySNLYSIVESKPGFIsLAWNDLPLLTLSSWR 600 99775589***********************************99****999999************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.66	206	578	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-108	234	600	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence Send to blast
MAYMCTDSGN LMAIAQQVIK QKQQQEEQQQ QRQDHQIFGI NPVSLNPWPP TNHQPLGFGL 60 SAPGFPDPFQ VPGGGGDPGD SGFPFPNLDH HHPTAGGGGG VFRLSDFDGG TGGEFESDEW 120 METLIGGGDP VAAEGPDCET WHNNPDFVIY GPDPFAAYPS RLSVPCSQPS DLNQVIVSSS 180 PPPHPSTLWA PSSPLPIPPP PSSSPPHQKT EDQETNDYED GGSPDFELEP PLLRAIYHCA 240 RILESDSDDA AKALVRIRES VSEIGDPTER VGFYFTEALC TGLSPDSVTK DSPSAATVEE 300 LTLSYKTLND ACPYSKFAHL TANQAILEAT ENSSNLHIVD FGIVQGIQWP ALFQALATRS 360 SGKPTRVRVS GIPAPSLGES PELSLIATGN RLRDFAKVLD LNFDFIPILT PIHLLDGSSF 420 RVDPDEVLAV NFMLQLYKLL DETPTIVDTA LRLARSLNPM VVTLGEYEVS LNRVGFATRV 480 KNALRFYSAV FESLEPNMGR DSEERVRVER VLFGRRISGL IGPEITGNQR ERMEDKEQWR 540 VLMENAGFEA VKLSNYAVSQ AKILLWNCNY SNLYSIVESK PGFISLAWND LPLLTLSSWR

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence Send to blast

MAYMCTDSGN LMAIAQQVIK QKQQQEEQQQ QRQDHQIFGI NPVSLNPWPP TNHQPLGFGL  60
SAPGFPDPFQ VPGGGGDPGD SGFPFPNLDH HHPTAGGGGG VFRLSDFDGG TGGEFESDEW  120
METLIGGGDP VAAEGPDCET WHNNPDFVIY GPDPFAAYPS RLSVPCSQPS DLNQVIVSSS  180
PPPHPSTLWA PSSPLPIPPP PSSSPPHQKT EDQETNDYED GGSPDFELEP PLLRAIYHCA  240
RILESDSDDA AKALVRIRES VSEIGDPTER VGFYFTEALC TGLSPDSVTK DSPSAATVEE  300
LTLSYKTLND ACPYSKFAHL TANQAILEAT ENSSNLHIVD FGIVQGIQWP ALFQALATRS  360
SGKPTRVRVS GIPAPSLGES PELSLIATGN RLRDFAKVLD LNFDFIPILT PIHLLDGSSF  420
RVDPDEVLAV NFMLQLYKLL DETPTIVDTA LRLARSLNPM VVTLGEYEVS LNRVGFATRV  480
KNALRFYSAV FESLEPNMGR DSEERVRVER VLFGRRISGL IGPEITGNQR ERMEDKEQWR  540
VLMENAGFEA VKLSNYAVSQ AKILLWNCNY SNLYSIVESK PGFISLAWND LPLLTLSSWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-144	231	600	3	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g29910

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006393872.1	0.0	scarecrow-like protein 4
Swissprot	Q9FL03	0.0	SCL4_ARATH; Scarecrow-like protein 4
TrEMBL	E4MVR5	0.0	E4MVR5_EUTHA; mRNA, clone: RTFL01-01-I07
TrEMBL	V4KUV4	0.0	V4KUV4_EUTSA; Uncharacterized protein
STRING	XP_006393872.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4786	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66770.1	0.0	GRAS family protein

Publications ? help Back to Top
Wortman JR, et al. Annotation of the Arabidopsis genome. Plant Physiol., 2003. 132(2): p. 461-8 [PMID:12805579] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]