PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

ERF

Protein Properties

Length: 182aa MW: 20662.8 Da PI: 6.5699

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g29480	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58	2.3e-18	21	70	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r +lg++ t+e Aa+a++ a +l+g Tp2g29480 21 PYKGIRMRK-WGKWVAEIREP---NKRSRLWLGSYATPEAAARAYDTAVFYLRG 70 59***99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	5.6E-37	21	84	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.2E-30	21	79	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.642	21	78	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-8	22	33	IPR001471	AP2/ERF domain
CDD	cd00018	2.64E-26	22	80	No hit	No description
Pfam	PF00847	3.6E-12	22	70	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.77E-21	22	79	IPR016177	DNA-binding domain
PRINTS	PR00367	1.2E-8	44	60	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MDGGGVADVA VTGTTRKRER PYKGIRMRKW GKWVAEIREP NKRSRLWLGS YATPEAAARA 60 YDTAVFYLRG PTARLNFPDL LAGENFSEED MSAATIRKKA TEVGAQVDAL GTAVLNNRHR 120 VFGQSRESDD DNNSKNFHRN YQNGEREEED EKRLKSGGWL LERVDLNKLP DPESSDEDWE 180 SK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-14	22	78	6	63	ATERF1
3gcc_A	1e-14	22	78	6	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00595	DAP	Transfer from AT5G67190	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g29480

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352993	1e-167	AK352993.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-09-J19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006393917.1	1e-112	ethylene-responsive transcription factor ERF010
Swissprot	Q9FH94	1e-106	ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBL	A0A1J3J7L5	1e-111	A0A1J3J7L5_NOCCA; Uncharacterized protein
STRING	XP_006393917.1	1e-112	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67190.1	1e-101	DREB and EAR motif protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]