PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g29240
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 429aa    MW: 47789.8 Da    PI: 5.1673
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g29240genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.33.5e-94274172373
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl..fsevsPilkfshlta 98 
                ++lLl+cA+a++s+d++laq++++ l++laspdgd++qRla+ f++AL +r + +++  +   ++s++s +  + +++++ +l  f++++P+++f++++a
  Tp2g29240  27 EQLLLHCANAIESNDATLAQQIIWVLNNLASPDGDSTQRLAFSFLRALISRAVTKCPAFAFLSAASAASVSLkTLHRFSVIELasFVDLTPWHRFGFIAA 126
                79***************************************************98887764444444433223455555555588*************** PP

       GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl...vakrledl 189
                N aIl+aveg + vHi+D+++++++Q p+L++++a++     +pp l++T+v ++++       ++ee+g++L +fA++ ++ +ef+++   + + l++l
  Tp2g29240 127 NAAILDAVEGYSSVHIVDLSLTHCMQIPTLIDSMATKLnkeLPPPLLKLTVVLPESPLpplLGISYEELGSKLVNFATTRNIAMEFRIVsssYPDGLSSL 226
                ***********************************9984445699*********88889888999***********************954444466666 PP

       GRAS 190 eleeLrvkp...gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                 +e+Lr++p   +Eal++n++++lh++++e++s++   r+ +Lk +++l+P++v ++e++ad +s+++  r+ + ++y++  +d+ ++ l r se+r+++
  Tp2g29240 227 -IEQLRLDPfvyNEALVINCHMMLHYIPHETLSSSCaSRSFFLKELRDLNPTMVALIEEDADFTSSNLISRLRSLFNYMWIPYDTADTFLTRGSEQRRWY 325
                .9*****************************9998768999*********************************************************** PP

       GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve....eesgslvlgWkdrpLvsvSaW 373
                E+  +g++i nvva+egaer+er e +++W er++ea F  v l+e aak++k++l +++ ++g++ +    ++ + +vl+Wk++++v++SaW
  Tp2g29240 326 EAD-IGWKIDNVVAKEGAERVERLEPKSRWFERMREAKFAGVGLGEAAAKEVKTMLGEHAaGWGMKRDveddDDVDHFVLTWKGHSVVFASAW 417
                ***.********************************************************9999876543434467899************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.5471393IPR005202Transcription factor GRAS
PfamPF035141.2E-9127417IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MILNPTRPIW PGLSSSKSLC GDANCMEQLL LHCANAIESN DATLAQQIIW VLNNLASPDG  60
DSTQRLAFSF LRALISRAVT KCPAFAFLSA ASAASVSLKT LHRFSVIELA SFVDLTPWHR  120
FGFIAANAAI LDAVEGYSSV HIVDLSLTHC MQIPTLIDSM ATKLNKELPP PLLKLTVVLP  180
ESPLPPLLGI SYEELGSKLV NFATTRNIAM EFRIVSSSYP DGLSSLIEQL RLDPFVYNEA  240
LVINCHMMLH YIPHETLSSS CASRSFFLKE LRDLNPTMVA LIEEDADFTS SNLISRLRSL  300
FNYMWIPYDT ADTFLTRGSE QRRWYEADIG WKIDNVVAKE GAERVERLEP KSRWFERMRE  360
AKFAGVGLGE AAAKEVKTML GEHAAGWGMK RDVEDDDDVD HFVLTWKGHS VVFASAWVPI  420
NGVESYIEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-501141918420Protein SHORT-ROOT
5b3h_E1e-501141918420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g29240
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596276.10.0PREDICTED: scarecrow-like protein 32
RefseqXP_013690820.10.0scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A078FIM70.0A0A078FIM7_BRANA; BnaC07g15890D protein
TrEMBLA0A0D3D8470.0A0A0D3D847_BRAOL; Uncharacterized protein
STRINGBo7g063640.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein