PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g29200
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 246aa    MW: 26362.8 Da    PI: 7.3261
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g29200genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-0595117123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ykC+ CgksFs+   L  H  +H
  Tp2g29200  95 YKCTVCGKSFSSYQALGGHKTSH 117
                9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.77E-1094117No hitNo description
Gene3DG3DSA:3.30.160.606.5E-595117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.30295122IPR007087Zinc finger, C2H2
PfamPF139122.2E-1395119IPR007087Zinc finger, C2H2
SMARTSM003550.002895117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SuperFamilySSF576674.77E-10160187No hitNo description
PfamPF139129.9E-11164189IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349165187IPR007087Zinc finger, C2H2
SMARTSM003550.82165187IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280167187IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MALETLNSPT SATDTARPLL RYREEMEPEY LEQWAKRKRT KRQRLDQNHH SQETTPSEEE  60
YLALCLLMLA RGSTVHSPLP PSPPLRPLSS DHRGYKCTVC GKSFSSYQAL GGHKTSHRKP  120
ASDVNVPSNQ EPSNNNSHSN SNGGSVVING NGNASNGVSQ SGKTHTCSIC FKSFSSGQAL  180
GGHKRCHYDG GNNGNGNGSS SNSIEVVGGS DVSDVDDERS SEQSAIGGHR GFDLNLPADQ  240
VAVVIS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00118ampDAPTransfer from AT5G67450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g29200
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013643278.11e-138zinc finger protein AZF1
SwissprotQ9SSW11e-113AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A078FAA31e-136A0A078FAA3_BRANA; BnaA06g25060D protein
TrEMBLA0A3P5YJ621e-136A0A3P5YJ62_BRACM; Uncharacterized protein
STRINGXP_006393949.11e-133(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.11e-87zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]