PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp2g28310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bZIP | ||||||||
Protein Properties | Length: 368aa MW: 42006.6 Da PI: 8.0839 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.3 | 1.3e-11 | 82 | 114 | 3 | 35 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekv 35 ++k +rr+++NReAAr+sR+RKka++++Le+ Tp2g28310 82 PDKIQRRLAQNREAARKSRLRKKAYVQQLETSR 114 6899*************************9854 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.7E-6 | 80 | 143 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.4E-9 | 82 | 112 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.634 | 82 | 124 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 8.53E-22 | 84 | 135 | No hit | No description |
SuperFamily | SSF57959 | 2.39E-7 | 84 | 118 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.7E-7 | 85 | 125 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 87 | 102 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.7E-29 | 170 | 245 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MNSTSTHFVP PRRVGIYDPL HQFGMWGETF KSNIGNGNMN TPSHIIIPNN QKLDNNLSED 60 TSHGTSGTPH MFDQEASTSR HPDKIQRRLA QNREAARKSR LRKKAYVQQL ETSRLKLIHL 120 EQELDRARQQ GFYVGNGVDT NSLGFSETMN PGIATFEMEY GHWIEEQNKQ ICELRTVLHG 180 HVGDVELRLL VETAMKHYFD LFRMKSAAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL 240 LKVLLPHFDV MTDQQILDVC NLRQSCQQAE DALSQGMEKL QHTLADCVAG GRLGEGSYIP 300 QVNSAMERLE ALVSFVNQAD HLRHETLQQM HRILTTRQAA RGLLALGEYF QRLRALSSSW 360 ATRHREPT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00586 | DAP | Transfer from AT5G65210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp2g28310 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK317142 | 0.0 | AK317142.1 Arabidopsis thaliana AT5G65210 mRNA, complete cds, clone: RAFL21-72-M22. | |||
GenBank | AK317488 | 0.0 | AK317488.1 Arabidopsis thaliana AT5G65210 mRNA, complete cds, clone: RAFL23-11-L19. | |||
GenBank | AY087049 | 0.0 | AY087049.1 Arabidopsis thaliana clone 31032 mRNA, complete sequence. | |||
GenBank | AY099593 | 0.0 | AY099593.1 Arabidopsis thaliana DNA binding protein TGA1a-like protein (At5g65210) mRNA, complete cds. | |||
GenBank | AY128838 | 0.0 | AY128838.1 Arabidopsis thaliana DNA binding protein TGA1a-like protein (At5g65210) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006394063.1 | 0.0 | transcription factor TGA1 | ||||
Refseq | XP_024007416.1 | 0.0 | transcription factor TGA1 | ||||
Swissprot | Q39237 | 0.0 | TGA1_ARATH; Transcription factor TGA1 | ||||
TrEMBL | A0A1J3CH79 | 0.0 | A0A1J3CH79_NOCCA; Transcription factor TGA1 | ||||
STRING | XP_006394063.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2976 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65210.5 | 0.0 | bZIP family protein |