 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Tp2g25510 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
| Family |
MYB |
| Protein Properties |
Length: 223aa MW: 25187.3 Da PI: 5.4287 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp2g25510 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 43.7 | 6.3e-14 | 15 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd +lvd + G g +W+ +++ g++R++k+c++rw +yl
Tp2g25510 15 KGPWTAEEDGKLVDFLRTRGCGggwCWRDVPKLAGLRRCGKSCRLRWTNYL 65
79***********************************************97 PP
|
| 2 | Myb_DNA-binding | 56.8 | 5.1e-18 | 71 | 115 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg +++eE +l++d++++lG++ W++Ia++++ gRt++++k++w+++
Tp2g25510 71 RGLFSEEEIQLIIDLHARLGNR-WSKIAAELP-GRTDNDIKNYWNTH 115
7889******************.*********.************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 223 aa
Download sequence Send
to blast |
MVGRKPCCDE VGLRKGPWTA EEDGKLVDFL RTRGCGGGWC WRDVPKLAGL RRCGKSCRLR 60
WTNYLRPDLK RGLFSEEEIQ LIIDLHARLG NRWSKIAAEL PGRTDNDIKN YWNTHIKRKL 120
IRMGIDPNTH RPFDQQKVND EEKKNVPVVL QNDTSARNQN QLGDVDGDDQ PWSFLVEDDG 180
GGGGGDLTML LSGDITSSCS SSSLWLKYGD LGYEDLELAC FDD
|
| Functional Description ? help
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| Source |
Description |
| UniProt | R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF199026 | 1e-135 | AF199026.2 Arabidopsis thaliana putative transcription factor (MYB99) mRNA, complete cds. |
| GenBank | AK175687 | 1e-135 | AK175687.1 Arabidopsis thaliana mRNA for MYB99, complete cds, clone: RAFL22-21-A14. |
| GenBank | AY519644 | 1e-135 | AY519644.1 Arabidopsis thaliana MYB transcription factor (At5g62320) mRNA, complete cds. |
| GenBank | DQ447105 | 1e-135 | DQ447105.1 Arabidopsis thaliana clone pENTR221-At5g62320 myb family transcription factor (At5g62320) mRNA, complete cds. |
| GenBank | DQ653390 | 1e-135 | DQ653390.1 Arabidopsis thaliana clone 0000017240_0000012066 unknown mRNA. |
