PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g25190
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HSF
Protein Properties Length: 303aa    MW: 34009.1 Da    PI: 6.943
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g25190genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1132e-35271172101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+++++ed++++++isw+e+g+sfvv+++ +fa+++Lpk+Fkh+nf+SFvRQLn+YgFkkv  ++         weF+++ F++g+k+ll++i+
     Tp2g25190  27 FLIKTFNLVEDRSIDDVISWNEDGSSFVVWNPADFARDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFSNDFFRRGEKRLLREIQ 114
                   9*****************************************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
     Tp2g25190 115 RRK 117
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-3718110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.3E-5523116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-3424116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.5E-182750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-3127116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-187890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MISPPPSDNG DAMVVTGESQ RSVPTPFLIK TFNLVEDRSI DDVISWNEDG SSFVVWNPAD  60
FARDLLPKHF KHNNFSSFVR QLNTYGFKKV VPDRWEFSND FFRRGEKRLL REIQRRKLTP  120
QPAVAPPPEV VAAQRLQTPK TVVSPSNSGE DQAMSPSSLY CQTGNGGLSV ELLEENEKLR  180
SRNIQLNREL TQMKSLCDNI FNLMSNYAGS PPDRSYYPGA SSSHDAMKPV EFLPEKRFSG  240
ETEVEEEASP RLFGVPIGLK RTRSEGVQVN TAALAEKSSG GGGNKEETPW LRHYNRANER  300
VCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-222711629129Heat shock factor protein 1
5d5v_B9e-222711629129Heat shock factor protein 1
5d5v_D9e-222711629129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g25190
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4938083e-95AB493808.1 Arabidopsis thaliana At5g62020 mRNA for hypothetical protein, partial cds, clone: RAAt5g62020.
GenBankAJ2518673e-95AJ251867.1 Arabidopsis thaliana mRNA for heat shock factor 6 (hsf6 gene).
GenBankAK2296903e-95AK229690.1 Arabidopsis thaliana mRNA for heat shock factor 6, complete cds, clone: RAFL21-11-D17.
GenBankBT0085423e-95BT008542.1 Arabidopsis thaliana clone U51273 putative heat shock factor 6 (At5g62020) mRNA, complete cds.
GenBankBT0086583e-95BT008658.1 Arabidopsis thaliana clone RAFL21-11-D17 (R51273) putative heat shock factor 6 (At5g62020) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151322.11e-178PREDICTED: heat stress transcription factor B-2a
SwissprotQ9SCW41e-149HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLM4D0Q01e-176M4D0Q0_BRARP; Uncharacterized protein
STRINGBra010049.1-P1e-177(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-148heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]