PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

ERF

Protein Properties

Length: 257aa MW: 28599.3 Da PI: 7.6656

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g24810	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.5	9.4e-20	99	149	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIr p + k r++lg+++ta eAa+a+++a+ +l+g Tp2g24810 99 HYRGVRRRP-WGKYAAEIRNP---NkKGSRIWLGTYDTAVEAARAYDQAAFQLRG 149 8******.******9...4345***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	3.7E-32	98	158	IPR001471	AP2/ERF domain
CDD	cd00018	5.66E-31	98	157	No hit	No description
SMART	SM00380	3.2E-36	99	163	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.724	99	157	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.35E-23	99	158	IPR016177	DNA-binding domain
Pfam	PF00847	3.5E-14	99	149	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-10	100	111	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-10	123	139	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0050832	Biological Process	defense response to fungus
GO:0051301	Biological Process	cell division
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MATKQEVSAI EFISQHLLTD FASMETKVYN FSLNEADPSL FTSQVHDFHS VTSPRTINNQ 60 TPKPKSTINR RKPPLPNLSV PKTVSGMMKK TEEEEEEKHY RGVRRRPWGK YAAEIRNPNK 120 KGSRIWLGTY DTAVEAARAY DQAAFQLRGR KAILNFPLDA RATSESCFKE GVVGLGKRKR 180 VKNSPPMEEE KAVAVRVKVE EEESEATETT EAEAEVEAVP LTPSSWMGVW DVGAGDGIFS 240 VPPLSPTSPN FSVISVT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-27	96	157	11	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00572	DAP	Transfer from AT5G61600	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g24810

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006394488.1	1e-146	ethylene-responsive transcription factor ERF104
Swissprot	Q9FKG1	1e-125	EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBL	V4KKN7	1e-145	V4KKN7_EUTSA; Uncharacterized protein
STRING	XP_006394488.1	1e-145	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13464	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61600.1	1e-117	ethylene response factor 104

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Moore M,Vogel M,Dietz K The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana. Plant Signal Behav, 2014. 9(10): p. 976479 [PMID:25482793]