PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g24280
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family TCP
Protein Properties Length: 360aa    MW: 40191 Da    PI: 6.9108
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g24280genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.61.9e-2963167366
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................................... 65 
                g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl+ ak  +++l+ +                                     
  Tp2g24280  63 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEVAKDDVDKLPPLqfphgfnqmypnlvfgnpgigessstsafpnlgfles 162
                78*************************************************************6766666666666666666655443333333333333 PP

        TCP  66 ....s 66 
                    +
  Tp2g24280 163 wdlgG 167
                33331 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.31664122IPR017887Transcription factor TCP subgroup
PfamPF036345.1E-2764138IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MRSRECDEEE IQAKQEGDHN HNHQVNLNNM LQQQNQPSLV SSSRQWASAF RNPRIVRVSR  60
TFGGKDRHSK VCTVRGLRDR RIRLSVPTAI QLYDLQDRLG LSQPSKVIDW LLEVAKDDVD  120
KLPPLQFPHG FNQMYPNLVF GNPGIGESSS TSAFPNLGFL ESWDLGGSSS RTRSRITDTS  180
TTRRESFDLD KGKWIKHDEN SNLQDHGLET NHQHFSLNNP YNNNNTSSYY NLGHLQQSLD  240
QSGTNNVTVA ISNVPTNNNN NLNLPPPPSS SAGDGSQLFF GPPPPAMSSL FPTYPSFLGA  300
SHHHHVVDRA GNLQLFSSNA NTASQQQMMT GNSSLIRPFH HLMSSNHDTD LHSSDNDSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1969123155Putative transcription factor PCF6
5zkt_B4e-1969123155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g24280
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280693.10.0transcription factor TCP5
SwissprotQ9FME30.0TCP5_ARATH; Transcription factor TCP5
TrEMBLR0EXI80.0R0EXI8_9BRAS; Uncharacterized protein
STRINGXP_006280693.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-161TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]