PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g20160
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family FAR1
Protein Properties Length: 697aa    MW: 79691.5 Da    PI: 6.3293
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g20160genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.52.6e-2479171190
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgkwevtkleleHnHela 90 
                ++Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke       +w+v+++++ HnHel 
  Tp2g20160  79 EYYSKFARKSGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIldggVTQWYVSQFSNVHNHELL 171
                69********************8888.******************************************9987656679*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.8E-2279171IPR004330FAR1 DNA binding domain
PfamPF105513.0E-22303396IPR018289MULE transposase domain
PROSITE profilePS509669.248565613IPR007527Zinc finger, SWIM-type
PfamPF044341.8E-5579612IPR007527Zinc finger, SWIM-type
SMARTSM005750.0019588615IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MASKPLNNIW IRRQQCPCGD WKCYIRVEGD ESSYQVTKSE METTTSTSTT RTSASSSPYD  60
AVFMPYVGQI FRTDDEAFEY YSKFARKSGF SIRKARSTES QNLGVYRRDF VCYRSGFNQP  120
RKKANVEHPR ERKSVRCGCD AKLYLTKEIL DGGVTQWYVS QFSNVHNHEL LEDDQVRLLP  180
AYRKIKQADQ ERILLLSKAG FPVNRIVKLL ELENGVQAGQ LPFIEKDVRN FVRACKKTVQ  240
ENDAFLTEKR ETDLLELFDS CKALAERDMN FAYDCTSDEN QKVENLAWAY GDSIQAYSIF  300
GDVVVFDTTY RSITYGLLLG MFFGIDNNGK AILLGCVLLQ DESCRSFTWA LQTFVRFVRG  360
GHPQTILTDI DTGLKDAIAR ELPNTNHVVS MWHVVSKLSS WFSQTLGSHY DDFRAGFEML  420
CRAGNVDEFE QQWDLLITRF GLVPDRHAAL LYSCRATWSP CYIRQHFLAQ TMTAEFNLSV  480
DSFLKRIVAG PTCMQLLLEE SMQVSAAASL AKQIVPRVPY PGMKTCMPME DHARAVLTPY  540
AFSLLQNEMV LSVQYAVSEM ANGPYIVHHF KKMEGECCVF WNPENEEIHC SCKEFEHSGT  600
LCRHSLRVLA VKNCFHIPEQ YFLVRWRQES PLVTEDNQNG LGNGDDCAQT FHSLTETLLT  660
ESMISKDRLD YTNQELSALI DRVRNIAAAN TYISHDC
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g20160
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026881e-175CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankT26D31e-175AF262043.1 Arabidopsis thaliana BAC T26D3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024007204.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X1
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLV4MLI20.0V4MLI2_EUTSA; Uncharacterized protein
STRINGXP_006395020.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]