PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g20050
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 324aa    MW: 35068.2 Da    PI: 9.2273
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g20050genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.64.2e-16165216455
                XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                +kr +r+ +NRe+ArrsR+RK+a + eLe+ v +L +eN++L k l   +++
  Tp2g20050 165 VKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRGENSKLLKGLTDVTQT 216
                69****************************************9988776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.3E-19162226IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.795164215IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.1E-12165216No hitNo description
PfamPF001703.4E-14165212IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.73E-12165215No hitNo description
PROSITE patternPS000360169184IPR004827Basic-leucine zipper domain
PfamPF124981.1E-13233281IPR020983Basic leucine-zipper, C-terminal
PfamPF124982.1E-5293319IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEKVFSVEEI SGNHLWSELA KDTGGTTAIN RSASEWAFHR FIQESSAAAD VASGGETATA  60
CGVSVSGPPS PSVPIDSEEY REFLKNKLNL ACAAVAMKRG DFIKLQDTSG RSENGGAHTS  120
SASEQGSLAS SKATTVMSNA ITSGSELSGD EEEADGETNM NPTHVKRVKR MLSNRESARR  180
SRRRKQAHLS ELETQVSQLR GENSKLLKGL TDVTQTFNDA AVENRVLKAN IETLRAKVKM  240
AEETVKRITG FNPMVHTIPR VSTVSLPSET SNSLDTSIQV SKPEISSGNK SKALIGCKMN  300
RTDSMRRVAS LEHLQKRIRS VGDQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178185RRSRRRKQ
2180185SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in controlling responses to starvation (PubMed:26263501). BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000269|PubMed:26263501, ECO:0000269|PubMed:29348240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g20050
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532650.0AK353265.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-D15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395031.10.0basic leucine zipper 63
SwissprotB9DGI81e-174BZP63_ARATH; Basic leucine zipper 63
TrEMBLA0A1J3IM170.0A0A1J3IM17_NOCCA; Basic leucine zipper 63
STRINGXP_006395031.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68462743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-161bZIP family protein
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Mair A, et al.
    SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants.
    Elife, 2016.
    [PMID:26263501]
  5. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]