PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

MYB

Protein Properties

Length: 326aa MW: 37323.5 Da PI: 5.0682

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g19930	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.6	6.7e-19	28	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd++l++++ +G g+W++ ar+ g++Rt+k+c++rw++yl Tp2g19930 28 RGPWTVEEDLKLINYISTHGDGRWNSLARCAGLKRTGKSCRLRWLNYL 75 89********************************************97 PP
2	Myb_DNA-binding	50.6	4.4e-16	81	124	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Tp2g19930 81 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEVKNYWRT 124 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.134	23	79	IPR017930	Myb domain
SuperFamily	SSF46689	3.56E-31	25	122	IPR009057	Homeodomain-like
SMART	SM00717	6.0E-16	27	77	IPR001005	SANT/Myb domain
Pfam	PF00249	4.3E-17	28	75	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-23	29	82	IPR009057	Homeodomain-like
CDD	cd00167	2.31E-12	30	75	No hit	No description
PROSITE profile	PS51294	18.281	80	130	IPR017930	Myb domain
SMART	SM00717	2.5E-14	80	128	IPR001005	SANT/Myb domain
Pfam	PF00249	8.2E-15	81	124	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-22	83	129	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MDDKRSLEIN KNIGDFEKNV DDEMDLRRGP WTVEEDLKLI NYISTHGDGR WNSLARCAGL 60 KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHSRWG NRWSKIAQYL PGRTDNEVKN 120 YWRTRVQKHA KQLRCDVNSQ QFKDTMRYLW MPRLVERIQA ASTSTTSTGS AATSSCVTTP 180 SDQFVITSYD DGVNNINMDH FGLMSNPNGY LTPETSSVAV SPASVLTEYH MGGEVGKIES 240 SYNPNQNMVG PQIMSPSQNY QEDNGGLLNG DYLTAMQEQS YLNWFEDING IIPSYSDSFW 300 SNIGSDEDFW LLQQQQQQQL VNNGSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-26	25	122	24	120	MYB TRANSFORMING PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g19930

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt (NaCl). {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009151285.1	1e-179	PREDICTED: transcription factor MYB108-like
Refseq	XP_009151286.1	1e-179	PREDICTED: transcription factor MYB108-like
Swissprot	Q9FGY3	1e-152	MYB78_ARATH; Transcription factor MYB78
TrEMBL	A0A0N7AGH4	1e-178	A0A0N7AGH4_BRANA; MYB transcription factor 78-2.1
STRING	Bra010021.1-P	1e-178	(Brassica rapa)
STRING	Bra010022.1-P	1e-178	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	1e-137	myb domain protein 78

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]