PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g19650
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GATA
Protein Properties Length: 124aa    MW: 13848 Da    PI: 10.7257
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g19650genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.5e-192255134
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
               C+ Cgt+kTplWR gp g+k+LCnaCG+++rkk+
  Tp2g19650 22 CADCGTSKTPLWRGGPAGPKSLCNACGIRNRKKR 55
               ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.71E-131565No hitNo description
PROSITE profilePS5011412.6111652IPR000679Zinc finger, GATA-type
SMARTSM004012.7E-131667IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-152055IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.61E-132166No hitNo description
PfamPF003204.2E-172256IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MKTRVEDMIE QNKSSSNDKK TCADCGTSKT PLWRGGPAGP KSLCNACGIR NRKKRRGVDD  60
KKPKKSHSGG DLKRNPKFSE SLKQRMMDLG MRNKSTVEKQ RRKLGEEEQA AVLLMALSYG  120
SVYA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g19650
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395075.11e-76GATA transcription factor 16
SwissprotQ9FJ103e-65GAT16_ARATH; GATA transcription factor 16
TrEMBLV4MLN43e-75V4MLN4_EUTSA; Uncharacterized protein
STRINGXP_006395075.15e-76(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-67GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]