PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g18120
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28088.3 Da    PI: 9.485
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g18120genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.96.3e-291058250
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               rienk++rqvtfskRr+g+ KKA+E+SvLCda+va+i+fs++gkl+eys
  Tp2g18120 10 RIENKIRRQVTFSKRRTGLVKKAQEISVLCDADVALIVFSPKGKLFEYS 58
               8***********************************************8 PP
2K-box78.51.6e-26851731199
      K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                +  + ++++e +kL + ++ ++r++R l+Ge+L+ Ls++eL+ Le q+++slk+ Rs+Kn+l++e+i +lqkkekel+e +k+L+kk++
  Tp2g18120  85 SDSQGECSTECSKLLRIMDVMERSLRYLKGEELDALSIRELHGLEMQIDTSLKRTRSRKNQLMVESIAQLQKKEKELKELKKQLTKKVD 173
                445678999******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.6161IPR002100Transcription factor, MADS-box
CDDcd002651.20E-39279No hitNo description
SuperFamilySSF554554.32E-31279IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-2285172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.3888178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRGRVQLRR IENKIRRQVT FSKRRTGLVK KAQEISVLCD ADVALIVFSP KGKLFEYSAG  60
SSMERILDRY ERCSYAGQDI PTPSSDSQGE CSTECSKLLR IMDVMERSLR YLKGEELDAL  120
SIRELHGLEM QIDTSLKRTR SRKNQLMVES IAQLQKKEKE LKELKKQLTK KVDQREEFDP  180
QNLSQGLASL ATPLCEPPHA LPRPISPPPP LCLGDTSKRN DVGEVDAGNL TRPTNTTLPH  240
WMPRLTGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-19170169MEF2C
5f28_B6e-19170169MEF2C
5f28_C6e-19170169MEF2C
5f28_D6e-19170169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g18120
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395258.11e-144truncated transcription factor CAULIFLOWER A
SwissprotQ424299e-72AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A1J3D0311e-144A0A1J3D031_NOCCA; Agamous-like MADS-box protein AGL8-like protein
STRINGXP_006395258.11e-144(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM130331525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.11e-122AGAMOUS-like 79
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]