PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

MYB

Protein Properties

Length: 282aa MW: 33021.7 Da PI: 10.1992

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g17650	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.6	9.4e-16	58	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W Ed +l ++v+ +G+ +W+ Ia++m+ gRt+k+c++rw++ Tp2g17650 58 RGHWRISEDSQLMELVAVYGPQNWNHIAEKMQ-GRTGKSCRLRWFNQ 103 789999************************.*********996 PP
2	Myb_DNA-binding	48.6	1.8e-15	111	154	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++ +E+e+l+ a++ +G++ W+ Ia+ ++ gRt++ +k++w+ + Tp2g17650 111 RAFSVDEEERLLAAHRAFGNK-WAMIAKLFN-GRTDNALKNHWHVL 154 6899***************.*****.*********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.116	53	104	IPR017930	Myb domain
SMART	SM00717	2.0E-11	57	106	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.12E-27	57	151	IPR009057	Homeodomain-like
Pfam	PF00249	4.2E-15	58	103	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-24	59	111	IPR009057	Homeodomain-like
CDD	cd00167	5.81E-10	61	102	No hit	No description
PROSITE profile	PS51294	24.85	105	159	IPR017930	Myb domain
SMART	SM00717	1.0E-12	109	157	IPR001005	SANT/Myb domain
Pfam	PF00249	6.0E-12	111	154	IPR001005	SANT/Myb domain
CDD	cd00167	2.99E-8	112	155	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.8E-19	112	159	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MDFSCFQEYP FDLRCRGAFN GFGENNAVKF SNKRRMVKES DELKKQKKKQ RGSRGCSRGH 60 WRISEDSQLM ELVAVYGPQN WNHIAEKMQG RTGKSCRLRW FNQLDPRINK RAFSVDEEER 120 LLAAHRAFGN KWAMIAKLFN GRTDNALKNH WHVLMARKLR LQSTSYIRRL DGSAHKPTAD 180 HKTLNLSPGT IDDEDMNVEK NSWKMLKEET TNLKAQYLQE EYCSTRMPMQ GPHHHYSTFP 240 ADSLALTLHA TKAPKFREKK KKLRAKQELD CSCHYYQSFC LL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-29	58	159	4	105	MYB PROTO-ONCOGENE PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269\|PubMed:19542355}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g17650

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF272732	1e-138	AF272732.1 Arabidopsis thaliana putative transcription factor (MYB110) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006395314.1	1e-158	transcription factor MYB117
Swissprot	Q9SEZ4	8e-62	MY105_ARATH; Transcription factor MYB105
TrEMBL	V4K4Z8	1e-156	V4K4Z8_EUTSA; Uncharacterized protein
STRING	XP_006395314.1	1e-157	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6300	18	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G29020.2	1e-144	myb domain protein 110

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]