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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp2g15210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | Trihelix | ||||||||
Protein Properties | Length: 389aa MW: 44737.3 Da PI: 6.7494 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 82.7 | 4.9e-26 | 73 | 156 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem++ ++++k++k+lW+++s kmre+gf rsp +C++kw+n+ k++kk k+++k+ s ++++++++e Tp2g15210 73 WVQDETRILITLRREMDSLFNTSKSNKHLWQQISTKMREKGFDRSPAMCTDKWRNMLKEFKKAKQQDKGS-GSGSAKMSHYKEIE 156 *******************************************************************986.566679*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-4 | 64 | 134 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.571 | 65 | 129 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.3E-5 | 69 | 131 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.93E-5 | 70 | 159 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 1.97E-27 | 71 | 136 | No hit | No description |
Pfam | PF13837 | 1.1E-20 | 72 | 157 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MFVSDKPRSP IDFYKDDNNP SPTSREINMM IDVTSNGDLQ APNQHQHQHQ IILGESSSED 60 HEIKAPKKRA ETWVQDETRI LITLRREMDS LFNTSKSNKH LWQQISTKMR EKGFDRSPAM 120 CTDKWRNMLK EFKKAKQQDK GSGSGSAKMS HYKEIEDILR ERNKKMTLYK SPTTPSSVAK 180 VASFMQFTEK GFEDSGMSFA SVEASGRPTL NLERQLDHDG HPLAIVSADA VTANGVPPWN 240 WRETSGNGSD GQPFVGKIIT LKFGDYTRRV GIDGTAEAIK EAIKSAFRLR TRRAFWLEDE 300 EQVVRSLDRD MPLGNYTLHV DEGIAVRVCH YDESDPLPVH QEEKIFYMED DYRDFLVRRG 360 WTCLREFDGF RNIDNMDDLQ PGVLYRGMR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 2e-43 | 67 | 154 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00380 | DAP | Transfer from AT3G25990 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp2g15210 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB072370 | 0.0 | AB072370.1 Arabidopsis thaliana mRNA for transcription factor GT-4, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006395605.1 | 0.0 | trihelix transcription factor GT-4 isoform X4 | ||||
Swissprot | Q9LU92 | 0.0 | TGT4_ARATH; Trihelix transcription factor GT-4 | ||||
TrEMBL | V4MMW6 | 0.0 | V4MMW6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006395605.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2891 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25990.1 | 0.0 | Trihelix family protein |