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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Tp2g13850 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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| Family |
Whirly |
| Protein Properties |
Length: 269aa MW: 29911.9 Da PI: 9.9222 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp2g13850 | genome | thellungiella | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 214.8 | 8.5e-67 | 91 | 230 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpa.akgsneGkvrkalkvePl 99
s+yk+kaal++++++p+f+al+sg++kl+++G+lll++a+a+++r+ydW++kq+f+ls+te+++lv+l+++esceffhdp kgs+eGkvrk+lkvePl
Tp2g13850 91 SIYKGKAALTIEPRAPEFVALESGAFKLSKEGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLVSLGPRESCEFFHDPYkGKGSDEGKVRKVLKVEPL 190
7*******************************************************************************945679************** PP
Whirly 100 pdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
pdGsG f+nlsv+n+l++++e++++P++kaefav++s+++
Tp2g13850 191 PDGSGRFFNLSVQNKLLNVDENVYIPITKAEFAVVISAFN 230
************************************9996 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 269 aa
Download sequence Send
to blast |
MTQQYLQLLS SPPMAVNPKM FFSSPRFLTV GGFSGKGHGF AVKPTERVKL SVKSRQEDYF 60
EKKRFGDSSS SPSHSPQNAE GSSPRFYVGH SIYKGKAALT IEPRAPEFVA LESGAFKLSK 120
EGFLLLQFAP AAGVRQYDWS RKQVFSLSVT EIGNLVSLGP RESCEFFHDP YKGKGSDEGK 180
VRKVLKVEPL PDGSGRFFNL SVQNKLLNVD ENVYIPITKA EFAVVISAFN FILPHLIGWQ 240
AFANSIKPED SNRPNNASPK YGGDYEWSR
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| Functional Description ? help
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| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In the nucleus, is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:19669906}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT015336 | 0.0 | BT015336.1 Arabidopsis thaliana At2g02740 gene, complete cds. |
| GenBank | BT015641 | 0.0 | BT015641.1 Arabidopsis thaliana At2g02740 gene, complete cds. |
| Publications
? help Back to Top |
- Lepage É,Zampini É,Brisson N
Plastid genome instability leads to reactive oxygen species production and plastid-to-nucleus retrograde signaling in Arabidopsis.
Plant Physiol., 2013. 163(2): p. 867-81
[PMID:23969600] - Zampini É,Lepage É,Tremblay-Belzile S,Truche S,Brisson N
Organelle DNA rearrangement mapping reveals U-turn-like inversions as a major source of genomic instability in Arabidopsis and humans.
Genome Res., 2015. 25(5): p. 645-54
[PMID:25800675] - Karpinska B,Alomrani SO,Foyer CH
Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
[PMID:28808105]
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