PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g13570
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 681aa    MW: 76384 Da    PI: 5.042
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g13570genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.6e-06116138326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 ++C ff++ G C  Gd C+F+H 
  Tp2g13570 116 PVPCVFFQK-GMCAKGDMCSFMHT 138
                579******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00143057IPR000571Zinc finger, CCCH-type
PfamPF156631.4E-103284No hitNo description
PROSITE profilePS501039.5453458IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.3996086IPR000571Zinc finger, CCCH-type
SMARTSM003560.0926285IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5113139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389113140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-4115138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6115138IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MFAPATQQQQ QQQQTNQSEP ASSAEEEALK WNTDCVYFLA SPLTCKKGAE CEYRHSEYAR  60
VNPRDCYYWL SGNCMNPKCG FRHPPLEGLL GNQGGAPAGS LKPSHAAAHP SVAKQPVPCV  120
FFQKGMCAKG DMCSFMHTPN PAGYKMQHSA EAKPAADPQF PKKPIENYTG EKKLTDASRA  180
VKAHVDISAA PRVTSAGLRD TRGVEGYIPK HVGYEPVVQK KVVRVPSFTD GNHSTQLLHK  240
YGSDDNNSFH NGKDADDVLR ESSPGFDVLV DNEARDSEYY HIEDGYGRRS QEGRNSLNEY  300
DPDFSAMADG DGEAFRDQRF DSYDRREERH AWGHRRVSSE RGDPLERRVY AEDERSENIL  360
ASDLRYRLAK QRKVNGTGSV GNHDYAAPDS SVERGYRDSR RNTPRESSIS SSRLQGRLKL  420
HERSNDDEAH FDRRTERGRD RSELSQGRLR DRIKGRLEEN HSGNQERGLR APWARRREME  480
DERSAFSAPK GIAETRSSKR EESKTETSLG KRKSLEEDHH PHKRSGDSFA APLPFSEILK  540
RKRAAASSGS SKNKDQTPHE TIAKEEAGDK TKLITEEKTE VVSEPNPTHK AELGEGTIME  600
EGEEVIGEEG EQVYEANEEE QAYEGDELNG EYYYDEGYEE DGEYAYEEGE EVVYAAEEGE  660
EDATAGGEAE GEEDNTVGML S
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g13570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395804.10.0zinc finger CCCH domain-containing protein 17
SwissprotQ9ZUM00.0C3H17_ARATH; Zinc finger CCCH domain-containing protein 17
TrEMBLV4K6A20.0V4K6A2_EUTSA; Uncharacterized protein
STRINGXP_006395804.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89681215
Publications ? help Back to Top
  1. Seok HY, et al.
    AtC3H17, a Non-Tandem CCCH Zinc Finger Protein, Functions as a Nuclear Transcriptional Activator and Has Pleiotropic Effects on Vegetative Development, Flowering and Seed Development in Arabidopsis.
    Plant Cell Physiol., 2016. 57(3): p. 603-15
    [PMID:26858286]
  2. Seok HY, et al.
    Arabidopsis non-TZF gene AtC3H17 functions as a positive regulator in salt stress response.
    Biochem. Biophys. Res. Commun., 2018. 498(4): p. 954-959
    [PMID:29548822]