PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

G2-like

Protein Properties

Length: 272aa MW: 30663 Da PI: 7.2975

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g13470	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.8	2.1e-32	35	88	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+av+ LGG+ +AtPk +l++m+vkgLt++hvkSHLQ+YR Tp2g13470 35 PRLRWTPDLHRCFVNAVDMLGGQYRATPKLVLKMMDVKGLTISHVKSHLQMYRG 88 8****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.939	31	91	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-29	31	88	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.6E-23	35	88	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.15E-14	35	87	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-8	36	87	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MGKCGGRNSN GNYNGVGFNG HGGDGVRPYV RSPVPRLRWT PDLHRCFVNA VDMLGGQYRA 60 TPKLVLKMMD VKGLTISHVK SHLQMYRGSK LTLGKPEESS SSSIRRRQDT EEDYLHDNLS 120 LHPRNDCLLG FHSFPLSSHS SLRGGGRRKK QTSETGGDDD DADFLHIMNM KKTKETTTFP 180 SHHFHKETEK EKNNWKNTWQ EEEQEHEHEE EQEDLSLSLS LNHHHWRSNG SSVSETSEAV 240 STCSAPFVFK DCFASSPKID LNLNLSISLL GS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	36	90	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	36	90	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	36	90	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	36	90	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g13470

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM222924	1e-145	HM222924.1 Thellungiella parvula phosphatase, cyclin J18, clathrin assembly protein-related protein, BPC1, SGR5/ATIDD15, leucine-rich receptor kinase, endomemebrane protein 70, salt overly sensitive 1, glutamate decarboxylae 4, oligopeptide transport protein, peptide transporter, and NADH-ubiquinone oxidoreductase B18 genes, complete cds; and unknown genes.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013693582.1	1e-151	putative Myb family transcription factor At1g14600
Swissprot	Q700D9	3e-84	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	E5F709	1e-171	E5F709_9BRAS; Uncharacterized protein
STRING	Bra026618.1-P	1e-150	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4694	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	4e-69	G2-like family protein

Publications ? help Back to Top
Oh DH, et al. Genome structures and halophyte-specific gene expression of the extremophile Thellungiella parvula in comparison with Thellungiella salsuginea (Thellungiella halophila) and Arabidopsis. Plant Physiol., 2010. 154(3): p. 1040-52 [PMID:20833729]