PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g13010
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 616aa    MW: 66712.3 Da    PI: 5.4391
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g13010genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.64.2e-1372516111374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaN 99 
                lv++L++cAea+++++l+la+al++++  la +++ +m+++a+yf+eALa+r++r        l pp+++ +++ s++l++   f+e++P+lkf+h+taN
  Tp2g13010 251 LVHALMACAEAIQNNNLTLAEALVKQIGFLAVSQAGAMRKVATYFAEALARRIYR--------LsPPQNQIDHSLSDTLQM--HFYETCPYLKFAHFTAN 340
                689****************************************************........414444444445555444..4**************** PP

       GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp. 198
                qaIlea+eg++rvH+iDf+++qGlQWpaL+qaLa R++gpp++R+Tg+g+p++++++ l+e+g +La++Ae+++v+fe++ +va++l+dl+ ++L+++p 
  Tp2g13010 341 QAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGIGPPAPDNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPs 440
                **************************************************************************************************99 PP

       GRAS 199 .gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                  Ea+aVn+v++lh+ll +++ +e+    vL +vk+++P +++vveqe++hn++ Fl+rf+e+l+yys+lfdsle      s++++++++++lg++i+n+
  Tp2g13010 441 eTEAVAVNSVFELHKLLGRPGGIEK----VLGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGV---PSSQDKVMSEVYLGKQICNL 533
                99*******************9999....*********************************************998...69999*************** PP

       GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                vaceg +r+erhetl++W +r++++GF p++l+++a kqa++ll+ ++ ++gyrvee++g+l+lgW++rpL+++SaW+
  Tp2g13010 534 VACEGPDRVERHETLSQWTNRFGSSGFAPAHLGSNAFKQASMLLALFNgGEGYRVEENNGCLMLGWHTRPLITTSAWK 611
                *****************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011292.5E-4053126No hitNo description
PfamPF120415.5E-3553119IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098566.09225590IPR005202Transcription factor GRAS
PfamPF035141.5E-134251611IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MKRDLHQYQG PNTRLSNHGT AIAGSSSSLP AVCAKDKMMM VKQEEEEDGG NMDELLAVLG  60
YKVRSSEMAE VALKLEQLET MMGNVQEDGL SHLATDTVHY NPSELYSWLD NMLTELNPPA  120
VPPSGSNGIL PSPEINNSFL TGAGDSSTIT TSIGGGGFAA SDYDLKAIPG NAIYQRSNQF  180
AIDSSSSSNQ AGNNKRLKSC SSPDSMVTST SPAAQIGGVI GTTVTTTTTT TAPESTRAVI  240
LVDSQENGVR LVHALMACAE AIQNNNLTLA EALVKQIGFL AVSQAGAMRK VATYFAEALA  300
RRIYRLSPPQ NQIDHSLSDT LQMHFYETCP YLKFAHFTAN QAILEAFEGK KRVHVIDFSM  360
NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR  420
GFVANSLADL DASMLELRPS ETEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV  480
VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPSSQDKV MSEVYLGKQI CNLVACEGPD  540
RVERHETLSQ WTNRFGSSGF APAHLGSNAF KQASMLLALF NGGEGYRVEE NNGCLMLGWH  600
TRPLITTSAW KLSAAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-6324661013377Protein SCARECROW
5b3h_D7e-6324661013377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g13010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525640.0AK352564.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-P11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395878.10.0DELLA protein RGA2
SwissprotQ5BN220.0RGA2_BRACM; DELLA protein RGA2
TrEMBLE4MVL70.0E4MVL7_EUTHA; mRNA, clone: RTFL01-02-P11
TrEMBLV4KPE30.0V4KPE3_EUTSA; Uncharacterized protein
STRINGXP_006395878.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein