PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g12370
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Trihelix
Protein Properties Length: 387aa    MW: 44177.8 Da    PI: 7.5679
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g12370genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.74.8e-26287368185
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                rW+++ev+aLi+ r+e+ee+ +    k++ W+e+s++m+ rg+ers+k+Ckekwen+nk+yk++ eg+kk+ +e+s+t +yf++l
  Tp2g12370 287 RWPQEEVQALIASRSEVEEKTGIH--KGAIWDEISARMKGRGYERSAKKCKEKWENMNKYYKRVIEGKKKQ-PEHSKTRSYFEKL 368
                8******************99887..99*****************************************95.9**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.2E-4284344IPR001005SANT/Myb domain
SuperFamilySSF466891.1E-5286370IPR009057Homeodomain-like
CDDcd122031.29E-22286348No hitNo description
PfamPF138372.1E-19286368No hitNo description
Gene3DG3DSA:1.10.10.604.3E-5286342IPR009057Homeodomain-like
PROSITE profilePS500907.515287342IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MELLTGDCRK PVGDDFAEDV DPFDGSDWMY GTRSLRPQGN DDALATLADL APPPQKLKPI  60
RCVVKPPSED RHPLDILAGT LDRLPEMGFL GDGCFEAPLG SKIADVEESG QLTRGFAKDE  120
LDMEFRGRIS RRRASWDGVS LSSSVDSDSD SHSSPDVRKA VTGKRKRQTR EKLEHFLVKL  180
VGSMMKRQEK MHNQLIKVME KMEQERIRSE EAWRQQEVER MKQNEEARKQ EMSRSATLIS  240
FIESVIGEEI EIPSPSDPRQ PLQYHPKQCE SAQTQGDMKF VFPSGRRWPQ EEVQALIASR  300
SEVEEKTGIH KGAIWDEISA RMKGRGYERS AKKCKEKWEN MNKYYKRVIE GKKKQPEHSK  360
TRSYFEKLGN LYKTNSGSAG HSGEKEE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g12370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398465.10.0trihelix transcription factor GTL1
RefseqXP_024010989.10.0trihelix transcription factor GTL1
TrEMBLV4LJC40.0V4LJC4_EUTSA; Uncharacterized protein
STRINGXP_006398465.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-174Trihelix family protein