PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

HD-ZIP

Protein Properties

Length: 813aa MW: 90591.9 Da PI: 5.4748

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g11680	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.5	7.4e-21	113	168	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF++n++p+ ++r++L+++lgL+ rqVk+WFqNrR+++k Tp2g11680 113 KKRYHRHTNRQIQEMEALFKENPHPDDKQRQRLSHELGLKPRQVKFWFQNRRTQMK 168 688999***********************************************998 PP
2	START	139.6	3.2e-44	320	554	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS START 1 elaeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla... 77 e+a ++ qel k+ + eep+Wvk e + +l+++e + + ea++a +vv+m++ +lv +l+ +W+e++ Tp2g11680 320 EIAVSCVQELTKMCDTEEPLWVKKKsdkmgggE----MLCLSEEEYMRLfpwpmenhknkreFCREASKANAVVIMNSITLVDAFLNAD-KWSEMFCsiv 414 578899*****************55533331....3444444333336666778889999889********************.**9999 PP .EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECTCEEEE CS START 78 .kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksnghskv 164 +a+t++ issg g l lm+aelq+lsplvp R+ +f+Ry +q + g w+ivd +ds ++ + +++v + + pSg++i++++ng+s+v Tp2g11680 415 aRAKTVQIISSGvsgasGSLLLMYAELQVLSPLVPtREAYFLRYVEQnAENGNWAIVDFPIDSFHDQIQplstnTPHVYK--RKPSGCIIQDMPNGYSQV 512 9******************************************99******999654433233666677776..************** PP EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 wvehv++++++ h+ + vksg+a+ga++w+ lqrqce+ Tp2g11680 513 KWVEHVEVNESHMHETFAEYVKSGMAFGASRWLDVLQRQCER 554 **************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.97E-20	103	171	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-21	107	176	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.767	110	170	IPR001356	Homeobox domain
SMART	SM00389	6.4E-19	111	174	IPR001356	Homeobox domain
CDD	cd00086	2.99E-19	113	171	No hit	No description
Pfam	PF00046	2.3E-18	113	168	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	145	168	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	42.417	311	557	IPR002913	START domain
SuperFamily	SSF55961	4.12E-30	312	555	No hit	No description
CDD	cd08875	2.35E-101	315	553	No hit	No description
SMART	SM00234	7.7E-25	320	554	IPR002913	START domain
Pfam	PF01852	8.3E-37	321	554	IPR002913	START domain
SuperFamily	SSF55961	3.43E-14	569	794	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 813 aa Download sequence Send to blast
MLTIGEESVM TSDNRFASPP PPSSSSPATI QNPNFNFIPF NSFSSLIPKD EHGMMSMSLM 60 MMMGDGAVEE MMENGSAGGS FGSGSEQAED PKSGNEFDVN ELQDDEQPPP AKKKRYHRHT 120 NRQIQEMEAL FKENPHPDDK QRQRLSHELG LKPRQVKFWF QNRRTQMKAQ QDRAENVMLR 180 AENDNLKAEN SHLQAELQCL SCPSCGGPTV LGDIPFNELH IENCRLREEL DRLCCVASRY 240 TGRPMQSMAS SQPLINPPSE LTHHQPSLEL DMSVYAGNFP EHPCPDLMLL PPQDTACFFP 300 DQTNNNNMLL ADEEKVIAME IAVSCVQELT KMCDTEEPLW VKKKSDKMGG GEMLCLSEEE 360 YMRLFPWPME NHKNKREFCR EASKANAVVI MNSITLVDAF LNADKWSEMF CSIVARAKTV 420 QIISSGVSGA SGSLLLMYAE LQVLSPLVPT REAYFLRYVE QNAENGNWAI VDFPIDSFHD 480 QIQPLSTNTP HVYKRKPSGC IIQDMPNGYS QVKWVEHVEV NESHMHETFA EYVKSGMAFG 540 ASRWLDVLQR QCERMAMIRS AEARRNMMKL SQRMMKTFCV NISTSYGQSW TALSETTKDT 600 VRITTRKVCE PGQPTGVVLA AVSTTWLPFS HLKVFDLLRD QHHHSLLEVL FNGNSPHEVA 660 HIANGSHPGN CISLLRINVA SNSWHNVELM LQESCIDNSG SLIVYSSVDV DSIQHAMNGE 720 DPSSIPLLPL GFSVVPVFPP DQAEGISVNS HPPPSCLLTV GIQVLASNVP TAKPNLSTVT 780 TINNHLCSIV NQITSVLSST VSSSAAAAKQ EVM

Sequence ? help Back to Top

Protein Sequence Length: 813 aa Download sequence Send to blast

MLTIGEESVM TSDNRFASPP PPSSSSPATI QNPNFNFIPF NSFSSLIPKD EHGMMSMSLM  60
MMMGDGAVEE MMENGSAGGS FGSGSEQAED PKSGNEFDVN ELQDDEQPPP AKKKRYHRHT  120
NRQIQEMEAL FKENPHPDDK QRQRLSHELG LKPRQVKFWF QNRRTQMKAQ QDRAENVMLR  180
AENDNLKAEN SHLQAELQCL SCPSCGGPTV LGDIPFNELH IENCRLREEL DRLCCVASRY  240
TGRPMQSMAS SQPLINPPSE LTHHQPSLEL DMSVYAGNFP EHPCPDLMLL PPQDTACFFP  300
DQTNNNNMLL ADEEKVIAME IAVSCVQELT KMCDTEEPLW VKKKSDKMGG GEMLCLSEEE  360
YMRLFPWPME NHKNKREFCR EASKANAVVI MNSITLVDAF LNADKWSEMF CSIVARAKTV  420
QIISSGVSGA SGSLLLMYAE LQVLSPLVPT REAYFLRYVE QNAENGNWAI VDFPIDSFHD  480
QIQPLSTNTP HVYKRKPSGC IIQDMPNGYS QVKWVEHVEV NESHMHETFA EYVKSGMAFG  540
ASRWLDVLQR QCERMAMIRS AEARRNMMKL SQRMMKTFCV NISTSYGQSW TALSETTKDT  600
VRITTRKVCE PGQPTGVVLA AVSTTWLPFS HLKVFDLLRD QHHHSLLEVL FNGNSPHEVA  660
HIANGSHPGN CISLLRINVA SNSWHNVELM LQESCIDNSG SLIVYSSVDV DSIQHAMNGE  720
DPSSIPLLPL GFSVVPVFPP DQAEGISVNS HPPPSCLLTV GIQVLASNVP TAKPNLSTVT  780
TINNHLCSIV NQITSVLSST VSSSAAAAKQ EVM

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g11680

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB013394	1e-137	AB013394.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD22.
GenBank	CP002688	1e-137	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006398384.1	0.0	homeobox-leucine zipper protein HDG5 isoform X1
Refseq	XP_024011151.1	0.0	homeobox-leucine zipper protein HDG5 isoform X1
Swissprot	Q9FJS2	0.0	HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBL	V4LBR7	0.0	V4LBR7_EUTSA; Uncharacterized protein
STRING	XP_006398384.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4356	25	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lung SC, et al. Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621]