PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 269aa MW: 29986.9 Da PI: 9.807

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g11500	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.7	6.6e-16	77	128	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++K + a+i+ A+++Ik+L+ Tp2g11500 77 QRMTHIAVERNRRRQMNQHLSVLRSLMPQP---FAQKGDQASIVGGAIDFIKELE 128 79**************************...9****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.73E-14	75	131	No hit	No description
SuperFamily	SSF47459	1.96E-16	75	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.031	76	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-13	77	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-14	77	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-10	82	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MTLEALSSNG LLNFLLSENL TPTPFKSEND IIVSQSTIPA ISHQEPSSRQ PAPVGRGKKR 60 RRRKPRVCKN EEEAENQRMT HIAVERNRRR QMNQHLSVLR SLMPQPFAQK GDQASIVGGA 120 IDFIKELEHQ LVSLEAQKLQ NAKLNQTVTS STSQDSNGEP ENPNQPCSLS LSQFFLHSYD 180 PNQENRNGST SSVKTAMEDL EVTLIETHAN IRILSRRIGF RWTTVATTGP PQLSKLVAAL 240 QSLSLSVLHL SVTTLDTFAI YSISTKVNY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	63	KKRRRRK
2	57	64	KKRRRRKP
3	58	63	KRRRRK
4	59	65	RRRRKPR
5	77	88	RMTHIAVERNRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g11500

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353555	0.0	AK353555.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-J01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006398364.1	1e-151	transcription factor bHLH71
Swissprot	Q56XR0	1e-137	BH071_ARATH; Transcription factor bHLH71
TrEMBL	A0A397Y2Z8	1e-151	A0A397Y2Z8_BRACM; Uncharacterized protein
TrEMBL	E4MYF8	1e-150	E4MYF8_EUTHA; mRNA, clone: RTFL01-52-J01
STRING	XP_006398364.1	1e-151	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10389	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46690.1	1e-117	beta HLH protein 71

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]