PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

G2-like

Protein Properties

Length: 278aa MW: 31020.8 Da PI: 7.1185

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g10470	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.6	6e-33	23	77	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Tp2g10470 23 KPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRL 77 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.285	20	80	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-31	20	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-16	23	80	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.3E-24	23	78	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-9	25	76	IPR001005	SANT/Myb domain
Pfam	PF14379	2.9E-14	128	171	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MERVNLGGLG YDNGGVMMTR DPKPRLRWTA DLHDRFVDAV AKLGGADKAT PKSVLKLMGL 60 KGLTLYHLKS HLQKYRLGQQ QGKKQNRAEQ NKENAGSSYV HFDNCSQGGI ANESRFDIHH 120 RQSGNVPFAD TLRHQVDAQQ RFQEQLEKKL QMRMEAQGKY LLTLLEKAQK SMPCGGNGVE 180 TDKGQFSDFN LAISGLVGDD HKNEKAGLVT DISHVNGDLT EDFRLCGETE KGETGDADVK 240 PESEFVHFDL NSKSGYDLLN TGNYGIEMKL NVITDRHQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	8e-20	23	76	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-20	23	76	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-20	23	76	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-20	23	76	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g10470

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018480474.1	0.0	PREDICTED: myb family transcription factor PHL11
Swissprot	C0SVS4	1e-179	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A397Z6C1	0.0	A0A397Z6C1_BRACM; Uncharacterized protein
TrEMBL	M4E8G5	0.0	M4E8G5_BRARP; Uncharacterized protein
STRING	Bra025071.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12495	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-169	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]