PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g10370
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 129aa    MW: 14229 Da    PI: 8.4941
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g10370genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.2e-0771113343
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                       W+  Ed  l++a k ++++   +W++Ia+ ++ g++   c  r
        Tp2g10370  71 TWSNGEDIALLNALKAFPKEaamRWEKIAAAVP-GKSKAACMKR 113
                      7********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.81864118IPR017877Myb-like domain
SMARTSM007172.9E-568120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-668115IPR009057Homeodomain-like
SuperFamilySSF466891.17E-969117IPR009057Homeodomain-like
PfamPF002491.6E-670113IPR001005SANT/Myb domain
CDDcd001678.80E-771118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MEFFEEDVPR FLFQSRPSSS RTTEDDNPKI PNKIFISISV FLKNRKASDP RLAEDAENSG  60
NGGDDEASTE TWSNGEDIAL LNALKAFPKE AAMRWEKIAA AVPGKSKAAC MKRVTELKKG  120
FRSSKSGAN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g10370
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535423e-90AK353542.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024011081.13e-47transcription factor MAMYB
RefseqXP_024011082.13e-47transcription factor MAMYB
SwissprotQ9ASQ24e-46MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A1J3CRT38e-48A0A1J3CRT3_NOCCA; DnaJ-like protein subfamily C member 2 (Fragment)
TrEMBLA0A1J3ES498e-48A0A1J3ES49_NOCCA; DnaJ-like protein subfamily C member 2 (Fragment)
STRINGXP_006279658.12e-46(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126921011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.12e-48MYB_related family protein