PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g10240
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family BES1
Protein Properties Length: 683aa    MW: 76705.7 Da    PI: 6.1843
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g10240genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822161.84.4e-50802261142
     DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq.sslk 99 
                gg+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGw v++DGttyr++ + +    +++++ ++s+es+l+ s+lk
  Tp2g10240  80 GGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVDPDGTTYRQSHQTN----HVVQFPTRSIESPLSsSTLK 175
                6899******************************************************************999888....999**********99999** PP

     DUF822 100 ssalaspvesysaspksssfpspssldsislasa........asllpvlsv 142
                ++a+a+   +++as++ ++ +sp+slds+ +a++           +p+ sv
  Tp2g10240 176 NCAKAALDCQQHASLRIDENLSPVSLDSVVIAENdhpgngryRGASPIASV 226
                *******************************99866666655444555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056878.8E-4781224IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.16E-158247681IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.2E-167250680IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.6E-82256653IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.5E-52286300IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.5E-52307325IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.5E-52329350IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.5E-52422444IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.5E-52495514IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.5E-52529545IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.5E-52546557IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.5E-52564587IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.5E-52602624IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MHTLNNNTTT GSQDPIDPNR NIDPDQYPHR NYNHPQSRRP RGFAAAAAAA SMGPAESDVN  60
NGNIAGIGGG ETSSGGGGGG GKGKREREKE KERTKLRERH RRAITSRMLA GLRQYGNFPL  120
PARADMNDVI AALAREAGWS VDPDGTTYRQ SHQTNHVVQF PTRSIESPLS SSTLKNCAKA  180
ALDCQQHASL RIDENLSPVS LDSVVIAEND HPGNGRYRGA SPIASVGCVE ANQIIQDVHS  240
TERNDFTEHF YVPVYAMLPV GIIDNFGQLV DPEGVRQELS YMKSLNVDGV VIDCWWGTVE  300
GWNPQKYVWS GYRELFNLIR GFKLKLQVVM AFHEYGGNAS GNVMTSLPQW VLEIGKDNPD  360
IFFTDREGRR SFECLNWSID KERVLHGRTG IEVYFDFMRS FRSEFDDLFV EGLIAAIEIG  420
LGASGELKYP SFPERMGWIY PGIGEFQCYD KYSQTSLLKE AKSRGFAFWG KGPENAGQYN  480
SQPHETSFFQ ERGEYDSYYG RFFLNWYSQL LIGHAENVLS LANLAFEETK IIVKIPAIYW  540
SYKTASHAAE LTAGYYNPSN RDGYSLVFET LKKYSVTVKF VCPGPHMSSN DHEEATADPE  600
GLSWQVVNAA WDKGLLIGGE NAITCFDRED CMRLIEMAKP RNHPDSYHFS FFTYRQPSPL  660
VQGSTCFADL DYFIKRMHGD IQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wqs_A1e-11625168112447Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g10240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171400.0AK117140.1 Arabidopsis thaliana At5g45300 mRNA for putative beta-amylase, complete cds, clone: RAFL16-68-D16.
GenBankBT0064820.0BT006482.1 Arabidopsis thaliana At5g45300 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613838.10.0PREDICTED: beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A0D3AUA10.0A0A0D3AUA1_BRAOL; Beta-amylase
STRINGBo2g127050.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108882832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]