PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g09070
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 381aa    MW: 41966.5 Da    PI: 8.1739
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g09070genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-07103126326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 e C+ f+ +G C++Gd C FaHg
  Tp2g09070 103 GEVCPEFRHGGDCSRGDECGFAHG 126
                589********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.22E-599130IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.183100128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5103128IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-5104126IPR000571Zinc finger, CCCH-type
SMARTSM003563136159IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000932Cellular Componentcytoplasmic mRNA processing body
GO:0010494Cellular Componentcytoplasmic stress granule
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDVEHHNSGQ IGRPTVDIPP RKLLSSAKSP LSASSPRRDN KDQKDYSYDS DSDDPYAGDH  60
FRMYEFKIRR CTRSRSHDWT DCPFSHPGEK ARRRDPRRYQ YTGEVCPEFR HGGDCSRGDE  120
CGFAHGVFEC WLHPSRYRTE ACKDGKHCKR KICFFAHSPR QLRVLPPSEN FVSGGGGSAS  180
SSPASVLSNK NNRCCMFCSH SPTSTLFDLA RSPSSSPPLS PANKAAALSR LSRRHSAVAY  240
KEVLNELVNS LDSFSLTDAL AAASSSSPVT MPVTTMAAML ASSNISNYNH RLPRWLDVGD  300
RDRQVQQSSL QFAFSPSSTP SYLSVQPPPS SFFSDEFTPR GGRLSDFTVA ATAAAEASDK  360
NSFEVGSSGD LDLGWVNDLL T
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g09070
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608781.10.0PREDICTED: zinc finger CCCH domain-containing protein 61-like
SwissprotQ9FKW20.0C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBLA0A0D3E6F30.0A0A0D3E6F3_BRAOL; Uncharacterized protein
TrEMBLA0A3N6QGN20.0A0A3N6QGN2_BRACR; Uncharacterized protein
TrEMBLA0A3P6DTV80.0A0A3P6DTV8_BRAOL; Uncharacterized protein
STRINGBo9g059770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44260.11e-154C3H family protein