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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Tp2g08990 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
| Family |
C2H2 |
| Protein Properties |
Length: 427aa MW: 47127.8 Da PI: 8.2682 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp2g08990 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 15.2 | 6.3e-05 | 26 | 46 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C+ Cgk F r nL+ H r H
Tp2g08990 26 CEVCGKGFQRDQNLQLHRRGH 46
*******************88 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010150 | Biological Process | leaf senescence |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0048573 | Biological Process | photoperiodism, flowering |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 427 aa
Download sequence Send
to blast |
MIYTDPEAEV IALSPKTLMA TNRFLCEVCG KGFQRDQNLQ LHRRGHNLPW KLKQRTSKEV 60
RKRVYVCPEK TCVHHHSSRA LGDLTGIKKH FCRKHGEKKW KCEKCAKRYA VLSDYKAHSK 120
TCGTREYRCD CGTIFSRRDS FITHRAFCDA LAEETAKINA ASHLGGLAAA GTAGINLNYQ 180
YLMGTLNPPL QPFVPQPPTN QNHHHHHFLP PPPSSSSSLS LWMGQDIPPP QPQPQDYEWV 240
FGNAKAASTC ININNNNNHD ELITQTANAS STTTAATLSV PSLFSSDQTQ SPNANTNMSA 300
TALLQKAAEI GANSTATTTN DPSAFLQSFP LKSSHQTATY DGGEKFFALF GSNNNIGVMS 360
HNHDQEIENA RNDVTVASAM DELQNYPWKR RRVDGGGEGG QTRDFLGVGV QTLCHPTSIN 420
MDGFDTI
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}. |
