PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp2g07430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 229aa MW: 26465 Da PI: 9.7415 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 78.9 | 6.6e-25 | 58 | 110 | 2 | 57 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +++rY eC+kN+Aa++G++a+DGCgEf++++ ++ +CaACgCHR+FHR ev Tp2g07430 58 TNARYGECRKNQAAAIGTTAYDGCGEFVSATAG---EDSANCAACGCHRSFHREEV 110 5789*************************9444...599**************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.1E-19 | 60 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.6E-23 | 61 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 20.899 | 62 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-17 | 62 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 8.97E-14 | 159 | 228 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-21 | 161 | 228 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.681 | 168 | 229 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 4.8E-27 | 171 | 227 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MDEIRSKQQE KRRRRNEGTP ICRETSDHVH YPPTRLTKCT RSRHAPPPIL KSIFQVTTNA 60 RYGECRKNQA AAIGTTAYDG CGEFVSATAG EDSANCAACG CHRSFHREEV FSNGVSKTIL 120 EVLKISSHEF RQIFCSPYGD GKSKEKKRIA IDRSNGGDIV EEEEAGRGRV KRLKTKFTEE 180 QTEKMRKYAE KLRWKVNPES REEVERFCIE VGVNRRKFMI WMYNHKEKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 7e-12 | 171 | 226 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp2g07430 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006416476.1 | 1e-111 | zinc-finger homeodomain protein 13 | ||||
Swissprot | Q9FMY7 | 1e-94 | ZHD13_ARATH; Zinc-finger homeodomain protein 13 | ||||
TrEMBL | A0A1J3E1G3 | 1e-116 | A0A1J3E1G3_NOCCA; Zinc-finger homeodomain protein 13 | ||||
STRING | XP_006416476.1 | 1e-110 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15888 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42780.1 | 5e-97 | homeobox protein 27 |