PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp2g03770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 218aa MW: 25224.1 Da PI: 8.494 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.9 | 2.7e-13 | 11 | 50 | 1 | 39 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLC.daevavii 39 ++ie k+ ++vtf+kRrng++ KA EL+ L ++++a++ Tp2g03770 11 EKIEKKTVKSVTFTKRRNGLFRKAAELCLLSsETQIAILA 50 579***************************6368888875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.451 | 3 | 40 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.9E-10 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-14 | 5 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-9 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-11 | 12 | 55 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.47E-15 | 17 | 82 | No hit | No description |
PRINTS | PR00404 | 3.9E-9 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence Send to blast |
MGGKKCKIKI EKIEKKTVKS VTFTKRRNGL FRKAAELCLL SSETQIAILA TPPSTNSHVS 60 FFSFGHSSVD HVVSSLLNDQ FPLEATTQEN MPGLGFWWED EGFERLENVD DLKDATDAIT 120 RTLNNLRLRL DTVKSTQRDE GLVIHQDEGS RLRNTETNNN NEERRINLLD LKELLVLKVW 180 LRMRRRILWT LMICSLTSIL IYYFDLINFR LCNMTCLV |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp2g03770 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018463935.1 | 4e-75 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
TrEMBL | A0A0D3E567 | 7e-73 | A0A0D3E567_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g043530.1 | 1e-73 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM454 | 17 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G60920.1 | 8e-40 | AGAMOUS-like 55 |