PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

TALE

Protein Properties

Length: 295aa MW: 33232.5 Da PI: 6.6138

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g01590	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.7	1.7e-07	245	277	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp+++++++L +++gL+ +q+ +WF N+R + Tp2g01590 245 WPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 277 58*****************************87 PP
2	ELK	22.7	2.3e-08	198	219	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ Tp2g01590 198 ELKLELKQGFKSRIEDVREEIM 219 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	6.4E-19	30	74	IPR005540	KNOX1
Pfam	PF03790	2.0E-16	32	73	IPR005540	KNOX1
SMART	SM01256	3.6E-25	84	139	IPR005541	KNOX2
Pfam	PF03791	3.5E-19	88	138	IPR005541	KNOX2
PROSITE profile	PS51213	9.202	198	218	IPR005539	ELK domain
PROSITE profile	PS50071	11.823	218	281	IPR001356	Homeobox domain
SMART	SM00389	6.3E-11	220	285	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.52E-16	220	284	IPR009057	Homeodomain-like
CDD	cd00086	1.37E-11	221	282	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.1E-25	225	283	IPR009057	Homeodomain-like
Pfam	PF05920	3.3E-18	238	277	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010192	Biological Process	mucilage biosynthetic process
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MQEPALGMIG ATVGGGGGDG DAAVMAEQNR QMKGEIATHP MYEQLLAAHV ACLRVATPID 60 QLPIIEAQLS HSHHLLRSYA STAVGFSHHD RHELDNFLAQ YVMVLCSFKE QLQQHVRVHA 120 VEAVMACREI ENNLHSLTGA TLGEGSGATM SEEEDDLQMD FSSDNSGVDF SGGHDMTGFG 180 PLLPTESERS LMERVRQELK LELKQGFKSR IEDVREEIMR KRRAGKLPGD TTTVLKNWWQ 240 QHCKWPYPTE DDKAKLVEET GLQLKQINNW FINQRKRNWH NNSHSLTSLK SKRKH

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in secondary cell wall biosynthesis. {ECO:0000269\|PubMed:15980264}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g01590

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	Z29073	0.0	Z29073.1 B.napus hd1 mRNA for homeodomain-containing protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010430375.1	0.0	PREDICTED: homeobox protein knotted-1-like 7
Refseq	XP_010473525.1	0.0	PREDICTED: homeobox protein knotted-1-like 7
Swissprot	Q9FPQ8	0.0	KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBL	A0A1J3GZ74	0.0	A0A1J3GZ74_NOCCA; Homeobox protein HD1
STRING	XP_010430375.1	0.0	(Camelina sativa)
STRING	XP_010473525.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM444	28	158

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62990.1	0.0	KNOTTED-like homeobox of Arabidopsis thaliana 7

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He JB, et al. KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis. J Integr Plant Biol, 2018. 60(6): p. 514-528 [PMID:29393579]