PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g01490

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GRAS

Protein Properties

Length: 673aa MW: 75151.3 Da PI: 7.0844

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g01490	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	423.9	1.4e-129	284	663	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 lv+l++ c ea+++++ +++++++ar +lasp+g +pm+Rl+ay+ eALa r+ar++++++++ pp+e ++ ++e+ +al+++++v+Pi+kf h+taN Tp2g01490 284 LVNLVTGCLEAIRTRNIAAINHFIARTGDLASPRGrTPMTRLIAYYIEALALRVARMWPHIFHIAPPREFERIMEDESGNALRFLNQVTPIPKFIHFTAN 383 578999***************************99******************************999********************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 +++l+a+eg+ervHiiDfdi+qGlQWp+++q+LasR+++p ++RiTg+g+ sk el+etg+rL+ fAe+++++fef++ v++rled++l++L+vk+g Tp2g01490 384 EMLLRAFEGKERVHIIDFDIKQGLQWPSFFQSLASRSNPPNHVRITGIGE----SKLELNETGDRLHGFAEAMNLQFEFHP-VVDRLEDVRLWMLHVKEG 478 **********************************************....***********************.7************* PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 E++aVn+v+q+h++l + + + ++++ l++s++P +v++eqea+hns ++ +r++++l+yysa+fd+++++lp++s r+k+E++l+grei+n+va Tp2g01490 479 ESVAVNCVMQMHKTLYDGTGAAI--RDFVGLIRSTNPIALVIAEQEAEHNSMQLETRVCNSLKYYSAIFDAIHTNLPTDSLIRVKIEEMLFGREIRNIVA 576 ***********88777777..99********************************************************************* PP GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdg.yrveee.........sgslvlgWkdrpLvsvSaWr 374 ceg++r+erh +++Wr++le+ GF+++ +se+++ q k+llr+++ ++g ++ve + g ++l W+d+pL+++S W+ Tp2g01490 577 CEGSHRQERHIGFRHWRRMLEQLGFRSLGVSEREVLQSKMLLRMYGsgNEGfFNVERSdedgdggggGGGVTLRWSDQPLYTISTWT 663 *****************************************985666889996567799999778888************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.348	258	631	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.7E-127	284	663	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence Send to blast
MLAGCSSSSL LSPTRRLRSE AVAATSATVA VHFPMNTQRL DLPCSSSFSR KETPTNRPLG 60 RSISLDNNNN NSNNNNKPIE RKTGGCSLKQ SIKLPPLATT RGNGEGFSWN NDNNNRGKKS 120 LKRLAEEDRE DESCLSRVKR QRGETGDDHN RGFWFEHFTA QNSSPALPFS LTCSGDDEEK 180 VCFAPSEVIS QPLPSNPLWV NSVITELAGL GDKDIDSSRP AAVKEASGSS TSASSESHSL 240 SHRVPESTNG SRNPYSLRGG TEERTIENIN NNNHRNDLQR DFELVNLVTG CLEAIRTRNI 300 AAINHFIART GDLASPRGRT PMTRLIAYYI EALALRVARM WPHIFHIAPP REFERIMEDE 360 SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID FDIKQGLQWP SFFQSLASRS 420 NPPNHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP VVDRLEDVRL WMLHVKEGES 480 VAVNCVMQMH KTLYDGTGAA IRDFVGLIRS TNPIALVIAE QEAEHNSMQL ETRVCNSLKY 540 YSAIFDAIHT NLPTDSLIRV KIEEMLFGRE IRNIVACEGS HRQERHIGFR HWRRMLEQLG 600 FRSLGVSERE VLQSKMLLRM YGSGNEGFFN VERSDEDGDG GGGGGGVTLR WSDQPLYTIS 660 TWTIGGVGGS SSF

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence Send to blast

MLAGCSSSSL LSPTRRLRSE AVAATSATVA VHFPMNTQRL DLPCSSSFSR KETPTNRPLG  60
RSISLDNNNN NSNNNNKPIE RKTGGCSLKQ SIKLPPLATT RGNGEGFSWN NDNNNRGKKS  120
LKRLAEEDRE DESCLSRVKR QRGETGDDHN RGFWFEHFTA QNSSPALPFS LTCSGDDEEK  180
VCFAPSEVIS QPLPSNPLWV NSVITELAGL GDKDIDSSRP AAVKEASGSS TSASSESHSL  240
SHRVPESTNG SRNPYSLRGG TEERTIENIN NNNHRNDLQR DFELVNLVTG CLEAIRTRNI  300
AAINHFIART GDLASPRGRT PMTRLIAYYI EALALRVARM WPHIFHIAPP REFERIMEDE  360
SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID FDIKQGLQWP SFFQSLASRS  420
NPPNHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP VVDRLEDVRL WMLHVKEGES  480
VAVNCVMQMH KTLYDGTGAA IRDFVGLIRS TNPIALVIAE QEAEHNSMQL ETRVCNSLKY  540
YSAIFDAIHT NLPTDSLIRV KIEEMLFGRE IRNIVACEGS HRQERHIGFR HWRRMLEQLG  600
FRSLGVSERE VLQSKMLLRM YGSGNEGFFN VERSDEDGDG GGGGGGVTLR WSDQPLYTIS  660
TWTIGGVGGS SSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-61	291	663	26	379	Protein SCARECROW
5b3h_A	2e-61	291	663	25	378	Protein SCARECROW
5b3h_D	2e-61	291	663	25	378	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g01490

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006391781.1	0.0	scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	V4KGW4	0.0	V4KGW4_EUTSA; Uncharacterized protein
STRING	XP_006391781.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7296	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein