PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g00100
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Dof
Protein Properties Length: 357aa    MW: 38181.1 Da    PI: 7.9035
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g00100genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.81.3e-3942103263
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                k++al+cprC+s ntkfCyynnysl+qPryfCkaCrryWt+GG+lrn+P+Ggg rknk+sss
  Tp2g00100  42 KDEALNCPRCNSLNTKFCYYNNYSLTQPRYFCKACRRYWTAGGSLRNIPIGGGVRKNKRSSS 103
                6899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-312794IPR003851Zinc finger, Dof-type
PfamPF027011.7E-3344100IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.82646100IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104884IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDTAKWPQEF VAKPMNEIVT NTCLKQPNPS APAVERKARP EKDEALNCPR CNSLNTKFCY  60
YNNYSLTQPR YFCKACRRYW TAGGSLRNIP IGGGVRKNKR SSSSSSSSSN SNSSSPSSSS  120
SSKKSLFVKN TPPPPPPPLP QLNPKTAENV HQAAAAKVQE LAFSQGFGNA HEVKDLNLAF  180
SQGFGIGHHQ HSIPEFLQVV PSSSMKNNSL VSTSSPLELL GISHSSDSRP AFMLPYPNVH  240
DSSVYTAAAS GFGLSYPQFQ EFMRPAVGFS LDGAYGGDPL QQEEGSIGTN SGRSLLPVES  300
LKLSSTNSGG NDNGTGNDHH HSDHEHEKEG EADQSVGFWN GMLSAGASAA SGGGSWQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00210DAPTransfer from AT1G64620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g00100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0848982e-84AY084898.1 Arabidopsis thaliana clone 120488 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_564836.11e-158Dof-type zinc finger DNA-binding family protein
SwissprotQ84JQ81e-159DOF18_ARATH; Dof zinc finger protein DOF1.8
TrEMBLA0A178W2N81e-157A0A178W2N8_ARATH; Uncharacterized protein
STRINGAT1G64620.11e-157(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149321720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64620.11e-138Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]