PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g41220

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

WRKY

Protein Properties

Length: 476aa MW: 52948.3 Da PI: 4.5675

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g41220	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.7	7.6e-31	294	351	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK+vkg+++prsYY+Ct++gC+vkk+ver ++d k+v+ tY g H+h+ Tp1g41220 294 DDGFRWRKYGQKVVKGNPNPRSYYKCTYSGCNVKKHVERGSDDVKLVVNTYDGIHEHP 351 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.0E-31	278	353	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-26	287	353	IPR003657	WRKY domain
PROSITE profile	PS50811	33.235	288	353	IPR003657	WRKY domain
SMART	SM00774	5.6E-35	293	352	IPR003657	WRKY domain
Pfam	PF03106	2.0E-23	294	351	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009960	Biological Process	endosperm development
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MNDCDGSFME MTSHWAPPSS PSPRTILAML NQTDNDNGLN PISEIFPQTS LSANHQSEQR 60 SGLTERVATR IGFTLPPLQT ENMSPFAAFF RNPTTVPSPV VPISPGYSPS ALLQSPNILS 120 DSSHIIPPSP IANDGPPDTV ESSGDNHATS MTINNDVHHQ PMHDDLPPQE DSDDIPTEES 180 VYMPSYESHS VYIPSHVDPI GAPLVASFES EVVDETDIIN LISLESESES ENEEYIDVQD 240 EDEDEIHDIV DELDVEPSSP KRRKFEVSSM IGATRTSKNQ RVIIQMECEE DLPDDGFRWR 300 KYGQKVVKGN PNPRSYYKCT YSGCNVKKHV ERGSDDVKLV VNTYDGIHEH PAPAARISTS 360 GTRSRSGSSM SQDHHSNQRT TRLGRPPSSS LASQDMRHFS SSLEHMRPFS SSVDPQIDMT 420 QLYMTGLSKL PSLPGNQNRG FMYRNDEPRI DHVTSDGTEV YKGIMDRLFR NFGVNL

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MNDCDGSFME MTSHWAPPSS PSPRTILAML NQTDNDNGLN PISEIFPQTS LSANHQSEQR  60
SGLTERVATR IGFTLPPLQT ENMSPFAAFF RNPTTVPSPV VPISPGYSPS ALLQSPNILS  120
DSSHIIPPSP IANDGPPDTV ESSGDNHATS MTINNDVHHQ PMHDDLPPQE DSDDIPTEES  180
VYMPSYESHS VYIPSHVDPI GAPLVASFES EVVDETDIIN LISLESESES ENEEYIDVQD  240
EDEDEIHDIV DELDVEPSSP KRRKFEVSSM IGATRTSKNQ RVIIQMECEE DLPDDGFRWR  300
KYGQKVVKGN PNPRSYYKCT YSGCNVKKHV ERGSDDVKLV VNTYDGIHEH PAPAARISTS  360
GTRSRSGSSM SQDHHSNQRT TRLGRPPSSS LASQDMRHFS SSLEHMRPFS SSVDPQIDMT  420
QLYMTGLSKL PSLPGNQNRG FMYRNDEPRI DHVTSDGTEV YKGIMDRLFR NFGVNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-26	284	354	8	78	Probable WRKY transcription factor 4
2lex_A	9e-26	284	354	8	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates seed size by negatively regulating the cellularization of syncytial endosperm (PubMed:16293693). {ECO:0000250\|UniProtKB:Q9SI37, ECO:0000269\|PubMed:16293693}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g41220

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006392618.1	0.0	probable WRKY transcription factor 10
Swissprot	Q9LG05	1e-163	WRK10_ARATH; Probable WRKY transcription factor 10
TrEMBL	V4KFE8	0.0	V4KFE8_EUTSA; Uncharacterized protein
STRING	XP_006392618.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10299	17	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55600.1	2e-72	WRKY DNA-binding protein 10

Publications ? help Back to Top
Li J,Nie X,Tan JL,Berger F Integration of epigenetic and genetic controls of seed size by cytokinin in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2013. 110(38): p. 15479-84 [PMID:24003120] Fatihi A,Zbierzak AM,Dörmann P Alterations in seed development gene expression affect size and oil content of Arabidopsis seeds. Plant Physiol., 2013. 163(2): p. 973-85 [PMID:24014578] Liu P, et al. Arabidopsis RAN1 mediates seed development through its parental ratio by affecting the onset of endosperm cellularization. Mol Plant, 2014. 7(8): p. 1316-1328 [PMID:24719465] Xiao YG,Sun QB,Kang XJ,Chen CB,Ni M SHORT HYPOCOTYL UNDER BLUE1 or HAIKU2 mixepression alters canola and Arabidopsis seed development. New Phytol., 2016. 209(2): p. 636-49 [PMID:26389843] Meng LS,Wang YB,Loake GJ,Jiang JH Seed Embryo Development Is Regulated via an AN3-MINI3 Gene Cascade. Front Plant Sci, 2016. 7: p. 1645 [PMID:27857719] Meng LS,Wang YB,Loake GJ,Jiang JH Corrigendum: Seed Embryo Development Is Regulated via an AN3-MINI3 Gene Cascade. Front Plant Sci, 2017. 8: p. 1073 [PMID:28616014]