PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g40770
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 475aa    MW: 53263.2 Da    PI: 8.6666
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g40770genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-0595117123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C++C+k F r  nL+ H r H
  Tp1g40770  95 FICEICNKGFQRDQNLQLHKRGH 117
                89******************988 PP
2zf-C2H213.50.00021172194123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k +  +s+ k H +t+
  Tp1g40770 172 WKCDKCSKKYAVQSDWKAHAKTC 194
                58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.86E-794117No hitNo description
Gene3DG3DSA:3.30.160.607.1E-694117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.80395117IPR007087Zinc finger, C2H2
PfamPF121713.1E-595117IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.02295117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SMARTSM00355150137167IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4160193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.86E-7167192No hitNo description
SMARTSM00355150172192IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MMMNKDMLFH HQQQMEENMS NLTSASGDQA SVSSGTRTET SGSNFHYNIN PNQQQEQCFV  60
PQSSQKKKRN QPGNPDPEAE VMALSPKTLM ATNRFICEIC NKGFQRDQNL QLHKRGHNLP  120
WKLKQRSNKD VIRKKVYVCP EPSCVHHHPS RALGDLTGIK KHFFRKHGEK KWKCDKCSKK  180
YAVQSDWKAH AKTCGTKEYK CDCGTLFSRR DSFITHRAFC DALAEESARA IPNPILIQSS  240
SSPPPPPQHH HHHQTQQNIN FSSSSQNIMR NNNLHGHEFP MKQEEPHHHF QNIPPWLASS  300
SNPNPNGNNG NYFPLASSSA TATTGRSNFH HSSPAMSATA LLQKAAQMGP SKSATTPEEE  360
ERSSSRQGAY NNLITTTMAA AMMTPPSEPG FGFQDYYMMN HHPHHHPGAG EAFNGGFITG  420
DKKNDVADDG RGETRDFLGL RSLMSHNEIL SFANNLGNCI NTSASEQQHQ YSHQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-36168229364Zinc finger protein JACKDAW
5b3h_F6e-36168229364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121134KLKQRSNKDVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g40770
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529940.0AK352994.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-L02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106906.10.0PREDICTED: protein indeterminate-domain 7
RefseqXP_013740522.10.0protein indeterminate-domain 7-like isoform X1
RefseqXP_018509298.10.0PREDICTED: protein indeterminate-domain 7
SwissprotQ8H1F50.0IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A3P6BBU90.0A0A3P6BBU9_BRACM; Uncharacterized protein
STRINGBo3g184730.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.10.0indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]