PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g39070

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

FAR1

Protein Properties

Length: 710aa MW: 82202 Da PI: 6.8727

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g39070	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.1	5.1e-22	103	186	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+evGF+vr+++s ++r++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ l+HnH+l Tp1g39070 103 NYYNCYATEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRINDVN-----RVRKETRTGCPAMIRMRQVDSKRWRVLEVTLDHNHSL 186 69***************************************9988.....999******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-19	103	186	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.6E-25	304	396	IPR018289	MULE transposase domain
Pfam	PF04434	4.2E-5	578	623	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.606	591	627	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	602	629	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 710 aa Download sequence Send to blast
MERNDSGDVD VQASAYLQTD ETHERDDPLS DGGCTEGIGE ALVCSSDHEI DVGFSQNEQR 60 KSEEEEEEGT REFDEQTGLP VERKEFDAPA VGMEFESYDD AYNYYNCYAT EVGFRVRVKN 120 SWFKRRSKEK YGAVLCCSSQ GFKRINDVNR VRKETRTGCP AMIRMRQVDS KRWRVLEVTL 180 DHNHSLGSKI YTSVRRTGTK RKCVSSADSD AKTIKLYRAR VMDIGNNVNP NSTMKKQFQN 240 TSGSPDLLNL RRGDSTAIYN YFCRMQLTNP NFFYLMDIND EGQLRNVFWA DGFSKVSCSY 300 FGDVIFIDNT YISGKFEIPL VTLVGVNHHG QTTLLSCGLL AGETMESYHW LLKVWFSLMK 360 CSPQTILTDR CKPLEAAISQ VFPRSHHRFS LAHIMRKIPE KLGGLFNYDG VRKAFTKAVY 420 ETLKVVEFEA AWGFMVHSFG VIDNEWLRSL YEDRARWAPV YLKDTFFAGI STARPGETLS 480 PFFERYVHKQ TPLKEFLDKY ELALQRKHRE ETLADIESLT LNNGELKTKC SFETQLARIY 540 TRDMFKKFQV EVEEMYSCFS TTQLHVDGPF LIFLVKERVQ VETNRREIRD FEVLYNRSVG 600 EVRCICSCFN FYGYLCRHAL CVLNFNGVEE IPLRYVLPRW RKDYKRVHAA DNGSTCYVNG 660 TDRLQRFDQL YKSAIQVVEE GAVSLDHYKV AMQVLQQSLE RVHSVEEKQE

Sequence ? help Back to Top

Protein Sequence Length: 710 aa Download sequence Send to blast

MERNDSGDVD VQASAYLQTD ETHERDDPLS DGGCTEGIGE ALVCSSDHEI DVGFSQNEQR  60
KSEEEEEEGT REFDEQTGLP VERKEFDAPA VGMEFESYDD AYNYYNCYAT EVGFRVRVKN  120
SWFKRRSKEK YGAVLCCSSQ GFKRINDVNR VRKETRTGCP AMIRMRQVDS KRWRVLEVTL  180
DHNHSLGSKI YTSVRRTGTK RKCVSSADSD AKTIKLYRAR VMDIGNNVNP NSTMKKQFQN  240
TSGSPDLLNL RRGDSTAIYN YFCRMQLTNP NFFYLMDIND EGQLRNVFWA DGFSKVSCSY  300
FGDVIFIDNT YISGKFEIPL VTLVGVNHHG QTTLLSCGLL AGETMESYHW LLKVWFSLMK  360
CSPQTILTDR CKPLEAAISQ VFPRSHHRFS LAHIMRKIPE KLGGLFNYDG VRKAFTKAVY  420
ETLKVVEFEA AWGFMVHSFG VIDNEWLRSL YEDRARWAPV YLKDTFFAGI STARPGETLS  480
PFFERYVHKQ TPLKEFLDKY ELALQRKHRE ETLADIESLT LNNGELKTKC SFETQLARIY  540
TRDMFKKFQV EVEEMYSCFS TTQLHVDGPF LIFLVKERVQ VETNRREIRD FEVLYNRSVG  600
EVRCICSCFN FYGYLCRHAL CVLNFNGVEE IPLRYVLPRW RKDYKRVHAA DNGSTCYVNG  660
TDRLQRFDQL YKSAIQVVEE GAVSLDHYKV AMQVLQQSLE RVHSVEEKQE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g39070

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006392912.1	0.0	protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	V4KS69	0.0	V4KS69_EUTSA; Uncharacterized protein
STRING	XP_006392912.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10788	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]