PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g36460
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 279aa    MW: 31449.6 Da    PI: 10.0436
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g36460genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.91.3e-081251140
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
               k+i nk+   + ++kR  g+  KA+ L+ L da++a++  
  Tp1g36460 12 KKITNKRSMATCYTKRSCGLYSKASQLCLLSDAQIAILAT 51
               6899********************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.47456IPR002100Transcription factor, MADS-box
SMARTSM004327.0E-8464IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-13577IPR002100Transcription factor, MADS-box
CDDcd002663.21E-18584No hitNo description
PRINTSPR004049.0E-5626IPR002100Transcription factor, MADS-box
PfamPF003193.0E-91353IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-52641IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MVRGTKRKIE IKKITNKRSM ATCYTKRSCG LYSKASQLCL LSDAQIAILA TPSSSQSNVS  60
FYSFGYSSVE SVVSAFLAGQ SPVPVPEESK QMREDIGVCL ARKELGLGFW WDDEKLVRCE  120
NPITRSYLQL QTFVIFLVMI SGIFSYKSEP VIKLATRADE RLRQQHKTLG NPFLGIEVHI  180
AVKGKYVLKS EKHTKTFLTK ARNSGIRDSF NASVSVLHCL KVESACPNRK KMQTEIRFLR  240
CVLNVYVLTG TFKQCRNLGS QSFLVCYFLK SYFDGPTAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g36460
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38620.19e-49M-type_MADS family protein