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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g36310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | B3 | ||||||||
Protein Properties | Length: 203aa MW: 23330 Da PI: 9.942 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.5 | 1.4e-14 | 31 | 121 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f k+ +p +++ + +p +f+ + g ++ s t+t++++ g + ++++ ++ ++++++++GW+eF++a+ L g + F+++g+s+f +v++f+ Tp1g36310 31 FMKIILPLTLEEKK-MKIPARFV-RLG--PKLSDTVTIQTPAGFKRSIRI--KRIGDKVWFENGWSEFAEAHSLSKGHLLYFHYQGNSSF--LVMIFDV 121 56666666666665.********.555..55889****************..**********************************9***..**99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.9E-19 | 25 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-18 | 28 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.47E-13 | 29 | 120 | No hit | No description |
PROSITE profile | PS50863 | 11.928 | 30 | 122 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.7E-15 | 31 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-12 | 31 | 121 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MKTTQRSSVR VASAASQRRQ TPESGPAVKK FMKIILPLTL EEKKMKIPAR FVRLGPKLSD 60 TVTIQTPAGF KRSIRIKRIG DKVWFENGWS EFAEAHSLSK GHLLYFHYQG NSSFLVMIFD 120 VSASEIDYPL DKSSDDESSE GVIDLEELLT KKPRVNVKSE KITIEIEEDK RALRKRKRSS 180 ENLCFFWFFP DIYLCGFELV IGF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g36310 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013602987.1 | 4e-82 | PREDICTED: B3 domain-containing protein At1g49475 isoform X1 | ||||
Refseq | XP_013720044.1 | 4e-82 | B3 domain-containing protein At1g49475-like isoform X1 | ||||
Swissprot | Q9XIB4 | 2e-69 | Y1475_ARATH; B3 domain-containing protein At1g49475 | ||||
TrEMBL | A0A0D3DJK8 | 9e-81 | A0A0D3DJK8_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g011590.1 | 2e-81 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 4e-64 | B3 family protein |
Publications ? help Back to Top | |||
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