PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp1g36020

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

CO-like

Protein Properties

Length: 326aa MW: 38142.5 Da PI: 5.3983

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g36020	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23	1.6e-07	11	55	2	40
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 ++r C+++ +k++ ++C +++ +lC+ C + H+ H++v Tp1g36020 11 RPRDCELCLNKHAVWYCASDDAFLCHVCDASVHSAnqvatkHERV 55 5788*****************************667788888766 PP
2	CCT	66	1.1e-22	278	321	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++ RY++Krk+R+FeKkirYe+RK +A++RpR+KGrFv+++ Tp1g36020 278 REARVWRYRDKRKNRLFEKKIRYEVRKINADKRPRMKGRFVRRS 321 9****************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.883	10	57	IPR000315	B-box-type zinc finger
SMART	SM00336	2.5E-8	10	57	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.1E-6	12	55	IPR000315	B-box-type zinc finger
CDD	cd00021	9.82E-9	15	57	No hit	No description
Pfam	PF06203	2.1E-17	278	320	IPR010402	CCT domain
PROSITE profile	PS51017	15.884	278	320	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MIPEHQEDVK RPRDCELCLN KHAVWYCASD DAFLCHVCDA SVHSANQVAT KHERVCLITN 60 EISNDVLQGT TSKPVWHSGF RRKARTPRIR CEKKPQQRID DDRRREDPRV PEIGGEGMFF 120 IPETNEDDED LTSLVPEFQG FIEMDFFLSN HDGCEETMRQ INFEDETDAT EDLCYNEEEG 180 KTDGDEACPE QSLMSCKKDY NNVITVTTKT EADEDYVSNT RQRNMLLRLN YENVIAAWDK 240 QESPRGATIN QTEFNNTSNF QLVPPGIEEK KVSSRSEREA RVWRYRDKRK NRLFEKKIRY 300 EVRKINADKR PRMKGRFVRR SLANDS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g36020

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353006	0.0	AK353006.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-C12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006393308.1	0.0	zinc finger protein CONSTANS-LIKE 8
Swissprot	Q9M9B3	1e-179	COL8_ARATH; Zinc finger protein CONSTANS-LIKE 8
TrEMBL	E4MWV9	0.0	E4MWV9_EUTHA; mRNA, clone: RTFL01-13-C12
TrEMBL	V4KHE5	0.0	V4KHE5_EUTSA; Uncharacterized protein
TrEMBL	V4KTA7	0.0	V4KTA7_EUTSA; Uncharacterized protein
STRING	XP_006393308.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15048	15	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49130.1	1e-157	B-box type zinc finger protein with CCT domain