PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g35920
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 318aa    MW: 34974.3 Da    PI: 9.5688
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g35920genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.8e-08754345
                     SS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwq 45
                      W+ eE++ + ++++++  +      +W++ a++++ +++l+++k ++ 
        Tp1g35920  7 TWSREEEKSFENGIAMHCVEeeitedQWRKMASMVP-TKSLEEVKKHYK 54
                     6****************999****************.**********96 PP
2Myb_DNA-binding44.63.3e-14135179347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
        Tp1g35920 135 PWTEEEHRLFLLGLEKFGKGDWRSISRNFVVTRTPTQVASHAQKY 179
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.816361IPR017884SANT domain
SMARTSM007176.2E-5459IPR001005SANT/Myb domain
PfamPF002494.4E-6754IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-4758IPR009057Homeodomain-like
CDDcd001672.97E-7757No hitNo description
SuperFamilySSF466891.22E-8864IPR009057Homeodomain-like
PROSITE profilePS5129417.498128184IPR017930Myb domain
SuperFamilySSF466892.37E-17130185IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17132182IPR006447Myb domain, plants
SMARTSM007171.6E-11132182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-11133178IPR009057Homeodomain-like
PfamPF002494.9E-12135179IPR001005SANT/Myb domain
CDDcd001677.79E-11135180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MESVVVTWSR EEEKSFENGI AMHCVEEEIT EDQWRKMASM VPTKSLEEVK KHYKILLEDV  60
KAIENGHVPV PRYQRKGLAG DEAAATSPAN RDCHSSGGSG SSEKKSNQGV SGISSSNGGG  120
RSGSKPEQER RKGIPWTEEE HRLFLLGLEK FGKGDWRSIS RNFVVTRTPT QVASHAQKYF  180
IRLNSMNRDR RRSSIHDITT VNNQAPAVTG QQQQQQQQMV KHRPSQPQAH PQPQPQPHHP  240
GATMAGLGMY GGAPVGQPII APPDHMGSAV GTPVMLPPPM GAHHHHHPHH HLGVAPYAVP  300
AYPVPPIPQQ HPAPSTMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-128771177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g35920
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588722.11e-177PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN69e-74SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A3N6S2F31e-177A0A3N6S2F3_BRACR; Uncharacterized protein
STRINGBo6g018000.11e-177(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103042535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-121MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]