PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g35160
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 414aa    MW: 46093.4 Da    PI: 6.0843
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g35160genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.11.1e-133476950
               HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
     SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
               +++ ++ R  ++lKKA+ELS+LC+ ev+vi +  +g+l ++++
  Tp1g35160 34 KNTNLCLRERTLLKKAYELSTLCENEVCVIHYDCNGNLvQTWP 76
               5688999*************************99887626776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-41777IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.7973378IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-1333113IPR002100Transcription factor, MADS-box
PfamPF003195.5E-93972IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDSSSSSSSR NKNSRLSVRT QTCFKKSSFP AKTKNTNLCL RERTLLKKAY ELSTLCENEV  60
CVIHYDCNGN LVQTWPEDQS KVRDMAERFS KLSDREKLKK STNLSQFLNK KINDEKKKSL  120
DDKKFSQKVL EIEGSLEDHL QILQDRLREI LYSKDHQTTT EPDQSGLAVI SEQHDNLPVS  180
SGFSSKDLHS SSSSSLIEDP LMNFCPPSVI NDPDHQQQNE SLTNLLMSGG VSTSTEQDLR  240
RAVYNSSGSG FATDSANHQH HQSKFSVFLF DHGTSTFTQL PDSVSSSFDQ TLTPYNNNLN  300
DNAALLGTQG FNVGYNNNLS TQGFNFGCNN NLSTQGFNFG YTNNLNTALH VEQGFNFGCN  360
NNLSTQGVNV GYNNNLSTAL DGEQGFNFGY NNNLNTALHV EQGFTFGYNN NLST
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g35160
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022574541.11e-104agamous-like MADS-box protein AGL53
TrEMBLA0A078GMT11e-100A0A078GMT1_BRANA; BnaA07g04800D protein
TrEMBLA0A3P6B2J81e-100A0A3P6B2J8_BRACM; Uncharacterized protein
STRINGBra018767.1-P5e-99(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.15e-54AGAMOUS-like 53