PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g34840
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family E2F/DP
Protein Properties Length: 387aa    MW: 44055.2 Da    PI: 5.3818
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g34840genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.58.2e-27150215171
    E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                r+++sL+llt+kf++l++++e+g ++ln +a+ L   +v  ++RRiYDi+NVLe+++liek+ kn+irwkg
  Tp1g34840 150 RYDSSLGLLTKKFVNLIREAEDGSLDLNYCADVL---EV--QKRRIYDITNVLEGIGLIEKTTKNHIRWKG 215
                6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.6E-28147217IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.2E-33150215IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.71E-17150213IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.1E-24152215IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146604.57E-40226333No hitNo description
SuperFamilySSF1440749.94E-29227332No hitNo description
PfamPF164219.4E-27231330IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAATSKSGED PTLSYNHRSP FRFELLQSLS PTDPRYSSSS TPSSTNRPFS VSQPLPNTQS  60
PQIQAHWDES YSPITQKFQK SRKNHRIQVG SISSSNLPGE TIDIAKVIVK QESPQDTKRG  120
NKSKVTKQSK AVKREAQQYG GPNGTNNNCR YDSSLGLLTK KFVNLIREAE DGSLDLNYCA  180
DVLEVQKRRI YDITNVLEGI GLIEKTTKNH IRWKGADNLG QLDLGDQIAR LKLEVESMQS  240
EETRLDDLIR ERQEALRSLE EDEYYRRYMF MTEEDITSLP RFKNQTLLAI KAPTASYIEV  300
PDPDEVMSFP QRQYQMVIRS RMGPIDVYLL SKYKGESMET NESDQNVSSG VDTPSLKIVT  360
SDTDLKTDYW FESNAEVSLT DLWNNFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-24142216174PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in transcriptional repression. May act by repressing E2F-regulated genes in mature differentiated cells, but is not an antagonist of E2FA. Restricts cell division and is involved in the coordination between cell proliferation and endoreduplication during development. May play a role during the transition from skotomorphogenesis to photomorphogenesis. Regulated by phosphorylation-dependent proteolysis via the protein-ubiquitin ligase SCF(SKP2A) complex. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12468727, ECO:0000269|PubMed:16920782, ECO:0000269|PubMed:19662336}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g34840
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light. {ECO:0000269|PubMed:12468727, ECO:0000269|PubMed:18424613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4000010.0AF400001.1 Thlaspi caerulescens E2F-related transcription factor 2 (E2F2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393509.10.0transcription factor E2FC isoform X1
SwissprotQ9FV700.0E2FC_ARATH; Transcription factor E2FC
TrEMBLV4JZ320.0V4JZ32_EUTSA; Uncharacterized protein
STRINGXP_006393509.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80828121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.10.0E2F/DP family protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]
  3. Huntley R, et al.
    The maize retinoblastoma protein homologue ZmRb-1 is regulated during leaf development and displays conserved interactions with G1/S regulators and plant cyclin D (CycD) proteins.
    Plant Mol. Biol., 1998. 37(1): p. 155-69
    [PMID:9620273]