PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Basic Information? help Back to Top

TF ID

Tp1g30270

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

MYB_related

Protein Properties

Length: 481aa MW: 54000.4 Da PI: 7.4089

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g30270	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.7	6.1e-09	362	385	23	47
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 W++Ia++++ gRt++++k++w+++ Tp1g30270 362 KWSLIAEKLP-GRTDNEIKNYWNTH 385 6*******.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03004	4.7E-22	243	349	IPR004252	Probable transposase, Ptta/En/Spm, plant
SMART	SM00717	0.0077	315	388	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.34E-7	361	391	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-6	362	385	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.551	362	386	IPR017877	Myb-like domain
CDD	cd00167	4.12E-6	362	386	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-12	362	387	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MVLDCWKITW KDRQRDQNYW NTHIKRKLLR LGIDPQTHLS INKTALSCPR NRDVKSTCST 60 PKTEASSEHG GSMSGTTTDE DLRLSVDCCY SYNSEEEEEL NLDLTLGSGP KSFGQVGSCY 120 LLLGGTCRLS FFIFIHKGAT RPATSSASRH PLPSLATVIS APERQNMPHL HPQRPDGSLC 180 DLDSWWSLAN VLRSIYQKYY WEPQHHDLVH LRWEGILKSS IRDLVSKRKR SGKKPDYIGL 240 ADWNTMLDAW EEEQHQKRSK INSENSSSNP DGLGSHRHTS GAKKHSRVAY EMSLEAGGVP 300 PPETEVVRKT HTRKDDTYID KRADILVKNA VALALERSEE FTLSDGTTDK PSASSSQPPI 360 FKWSLIAEKL PGRTDNEIKN YWNTHIKRKL LSLGIDPQTH RSINETTLSR PRKGDVKSTC 420 STPKTEASSE HGGSMSGTTT DEDLRLSVDC CYSYYSEEEE ELNLDLTLGS GPKSFGQVGS 480 C

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MVLDCWKITW KDRQRDQNYW NTHIKRKLLR LGIDPQTHLS INKTALSCPR NRDVKSTCST  60
PKTEASSEHG GSMSGTTTDE DLRLSVDCCY SYNSEEEEEL NLDLTLGSGP KSFGQVGSCY  120
LLLGGTCRLS FFIFIHKGAT RPATSSASRH PLPSLATVIS APERQNMPHL HPQRPDGSLC  180
DLDSWWSLAN VLRSIYQKYY WEPQHHDLVH LRWEGILKSS IRDLVSKRKR SGKKPDYIGL  240
ADWNTMLDAW EEEQHQKRSK INSENSSSNP DGLGSHRHTS GAKKHSRVAY EMSLEAGGVP  300
PPETEVVRKT HTRKDDTYID KRADILVKNA VALALERSEE FTLSDGTTDK PSASSSQPPI  360
FKWSLIAEKL PGRTDNEIKN YWNTHIKRKL LSLGIDPQTH RSINETTLSR PRKGDVKSTC  420
STPKTEASSE HGGSMSGTTT DEDLRLSVDC CYSYYSEEEE ELNLDLTLGS GPKSFGQVGS  480
C

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g30270

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35515.1	2e-37	high response to osmotic stress 10