PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g28690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | Trihelix | ||||||||
Protein Properties | Length: 674aa MW: 74690.5 Da PI: 6.0156 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 97.3 | 1.4e-30 | 65 | 149 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laL+++r++m++++r++ lk+plWe+vs+k+ e g++rs+k+Ckek+en++k+yk++ke++++r++++ +++f+qlea Tp1g28690 65 RWPREETLALLRIRSDMDSTFRDATLKAPLWEHVSRKLLELGYKRSAKKCKEKFENVQKYYKRTKETRGGRHDGK--AYKFFSQLEA 149 8*********************************************************************86555..5******985 PP | |||||||
2 | trihelix | 104.3 | 9.2e-33 | 433 | 517 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k e+laLi++r+ me r++++ k+ lWee+s m++ g++r++k+Ckekwen+nk+ykk+ke++kkr +++ +tcpyf++l+ Tp1g28690 433 RWPKAEILALINLRSGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKKR-PQDAKTCPYFHRLD 517 8*********************************************************************8.99999*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.946 | 58 | 122 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0076 | 62 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.1E-20 | 64 | 150 | No hit | No description |
CDD | cd12203 | 4.54E-27 | 64 | 129 | No hit | No description |
PROSITE profile | PS50090 | 6.864 | 426 | 490 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.011 | 430 | 492 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 5.8E-22 | 432 | 517 | No hit | No description |
CDD | cd12203 | 5.98E-30 | 433 | 497 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0030308 | Biological Process | negative regulation of cell growth | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0042631 | Biological Process | cellular response to water deprivation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000037 | Biological Process | regulation of stomatal complex patterning | ||||
GO:2000038 | Biological Process | regulation of stomatal complex development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 674 aa Download sequence Send to blast |
MEQVGGAGGG GGGGGSGNEV VEEASPISSR PPANLEELMR FSATADDGGV LGGGGGSSSS 60 SSGNRWPREE TLALLRIRSD MDSTFRDATL KAPLWEHVSR KLLELGYKRS AKKCKEKFEN 120 VQKYYKRTKE TRGGRHDGKA YKFFSQLEAL NTTPPPSSLD VAPLSVANPI QPPSSSPSQF 180 PVFPLTQTPP LQPLQPHTVS FTTPNPAPPP LPMGPTFPGV TFSSHSSSTA SGMGSDDDDD 240 EEDMDVDQAG PSSSRKRKRG NRGTGGGKMM ELFEGLVRQV MQKQAAMQRS FLDALEKREQ 300 ERLYREEAWK RQEMSRLARE HEIMSQERAA SASRDAAIIS LIQKITGHTI QLPPSLSSQP 360 PPPPHQPPPA AKRPSSQAAE PPQFQPIMAI PQQQVLPPPP PPPHQPEQKQ QQHQQPQQEM 420 IMSSDQSSPS SSRWPKAEIL ALINLRSGME PRYQDNVPKG LLWEEISTSM KRMGYNRNAK 480 RCKEKWENIN KYYKKVKESN KKRPQDAKTC PYFHRLDLLY RNKVLGSGGG SSASVLPQDQ 540 ISTVQKQSPV SAMKPPQEGV VNVQPHGSAS SEEEEPREES PQGAEKLLVL KPEDLVMREL 600 MQRQEQQQQD SMIGEYEKIE ESQNYNNMAE EEEEMDEEEL DEDEKSAAYE IAFQSPANRG 660 GNGHTEPPFL TMVQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 115 | KRSAKKCKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00177 | DAP | Transfer from AT1G33240 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g28690 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by water stress. {ECO:0000269|PubMed:21169508}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013742646.1 | 0.0 | trihelix transcription factor GTL1-like isoform X1 | ||||
Swissprot | Q9C882 | 0.0 | GTL1_ARATH; Trihelix transcription factor GTL1 | ||||
TrEMBL | A0A3P6GSC2 | 0.0 | A0A3P6GSC2_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo6g049430.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6226 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33240.1 | 1e-130 | GT-2-like 1 |
Publications ? help Back to Top | |||
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