PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g28570
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HSF
Protein Properties Length: 480aa    MW: 54164.4 Da    PI: 4.5777
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g28570genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.66.6e-36281192102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sws+n+nsf+v+d+ efa+++Lpk Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i 
     Tp1g28570  28 FLSKTYDMVDDPATDSIVSWSANNNSFIVWDPPEFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKTIT 115
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     Tp1g28570 116 RRKP 119
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-3922112IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-3623117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-6324117IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3128117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-192851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MESTEIQPPP PPQPQPVAVL SANAPPPFLS KTYDMVDDPA TDSIVSWSAN NNSFIVWDPP  60
EFARDLLPKN FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL LKTITRRKPA  120
HGHGHQQSQH SNGQNTSVSA CVEVGKFGLE EEVERLKRDK NVLMQELVRL RQQQQSTDNQ  180
LQTMVQRLQG MENRQQQLMS FLAKAVQSPH FLSQFLQQQN QQNESSRRIS DTSKKRRFKR  240
DGVVSNKDSA SSDGRIVKYQ PPMHEQAKAM FRQLMKMEPY KNGDDGFLLG NGTSTTTEGT  300
EMEISSNNVS GITLQEMPTA SEIQSSSPSG ATPENVTVAE FPTPKEAIPS PDDLSLPEFA  360
DMLPENIGEM PSGNFLDPNM EDFSPFLDSD LFINGDIPFD IDGIPRDPDL EPPIDDYASL  420
LEDILMSSPV PDDMDVTPVD LRNKDNEAEE KQNRWDKTKH MDNLTQQMGL LSPETIDLSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-252611718120Heat shock factor protein 1
5d5u_B1e-252611727129Heat shock factor protein 1
5d5v_B1e-252611727129Heat shock factor protein 1
5d5v_D1e-252611727129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233238KKRRFK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g28570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892550.0AC189255.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586097.10.0PREDICTED: heat stress transcription factor A-1d
SwissprotQ9LQM70.0HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLA0A0D3CDP80.0A0A0D3CDP8_BRAOL; Uncharacterized protein
TrEMBLA0A3N6TL040.0A0A3N6TL04_BRACR; Uncharacterized protein
STRINGBo5g048950.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.10.0heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]