PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g26550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | WRKY | ||||||||
Protein Properties | Length: 423aa MW: 45919.7 Da PI: 5.779 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.6 | 4.1e-31 | 212 | 270 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs+fpr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Tp1g26550 212 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 270 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.3E-31 | 205 | 272 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.879 | 206 | 272 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-26 | 209 | 272 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.3E-38 | 211 | 271 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.3E-26 | 213 | 270 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MCSVFELLEM DINFQGDLTD VVRGVGGNVL SPEIPSPPSI WPLPQPSPSD LHINPFGDPF 60 VSMTDPLLQE LNAVTNSGYF STAGDNTNNN NGFLVPKPLE DDHIKSQCSI FPRIRISHSN 120 IIHDSSPCNS PAMSAQVVAA AAAASPRGII NVDTNSPRNC LLVDGNTFSS QIQISSPRNI 180 GLKRRKSQAK KVVCIPAPAA MNSRSSGEVV PSDLWAWRKY GQKPIKGSPF PRGYYRCSSS 240 KGCSARKQVE RSRTDPNMLV ITYTSEHNHP WPIQRNALAG STRSSSSSNP NSSKSSSTAN 300 AAASINGPRN NTRLPSSASP PPPPLSASSV KDEHREDDME LENVEDDENN QIAPYRPELH 360 HQHQPDDFFA DLEELEGDSL SMLLSQGCAG DRNSKTAASD GISDFFGWSE GNNNHDDRDS 420 RSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-25 | 186 | 272 | 2 | 79 | Disease resistance protein RRS1 |
5w3x_D | 1e-25 | 186 | 272 | 2 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00171 | DAP | Transfer from AT1G30650 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g26550 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228343 | 0.0 | AK228343.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-76-G23. | |||
GenBank | BT006468 | 0.0 | BT006468.1 Arabidopsis thaliana At1g30650 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006415439.1 | 0.0 | probable WRKY transcription factor 14 | ||||
Swissprot | Q9SA80 | 0.0 | WRK14_ARATH; Probable WRKY transcription factor 14 | ||||
TrEMBL | V4KUS1 | 0.0 | V4KUS1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006415439.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3085 | 28 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30650.1 | 0.0 | WRKY DNA-binding protein 14 |
Publications ? help Back to Top | |||
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