PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g24700
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HB-other
Protein Properties Length: 1690aa    MW: 190471 Da    PI: 4.9394
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g24700genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.7e-193792257
               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
   Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                kR+  t+ qle+Le++++++ yps+++r+eL++kl+L++rq ++WF+ rR k+kk
  Tp1g24700 37 PKRQMKTPFQLETLEKVYAEETYPSEATRAELSEKLDLSDRQLQMWFCHRRLKDKK 92
               69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.1473393IPR001356Homeobox domain
SuperFamilySSF466898.55E-163492IPR009057Homeodomain-like
SMARTSM003891.3E-183597IPR001356Homeobox domain
PfamPF000461.3E-163792IPR001356Homeobox domain
CDDcd000861.59E-143892No hitNo description
Gene3DG3DSA:1.10.10.603.0E-173892IPR009057Homeodomain-like
PROSITE profilePS5082716.925528587IPR018501DDT domain
SMARTSM005717.5E-22528587IPR018501DDT domain
PfamPF027913.5E-16529584IPR018501DDT domain
PfamPF050668.9E-16710777IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156123.4E-7916958IPR028942WHIM1 domain
PfamPF156132.5E-1310831155IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1690 aa     Download sequence    Send to blast
MEMGSDGEDQ IRSVGDGNKK KKKIETFNSK DALAAKPKRQ MKTPFQLETL EKVYAEETYP  60
SEATRAELSE KLDLSDRQLQ MWFCHRRLKD KKDGQAKKPA KPAAVQPAAA AALSSVNELP  120
AAGSVPELDS RSGSGSGSGC SPYSESRRNF ASGSSSSRAE LDEYETMGNA GYEPRLSMMV  180
RRAIVCIEAQ LGEPLRDDGP ILGMEFDPLP PGAFGTPIAM QKHQVHPYES KMYEPHDVRP  240
RRQSLDDPSS FTPEMYGRYS ESHARGVDYE IARSKSSSFM HGNGSLARSY GTHGNASRNC  300
STSQQDMPSP IVPSAHGDSF LPERDLRIED PYLLTDGVRK SNDVHRKGKI NDGRLGRGSG  360
QKDLEKLEIQ RKKNEERMRK EMERQERERR KEEERLMRER IKEEERLQRE QRREMERREK  420
FLQRENERAE KKKQKEEIRR EKDAIRRKIA IEKATARRIA KESMDLIEDE QLELMDLAAT  480
SKGLPSVLQL DHETLQNLDL YRDSLSTFPP KALQLKMPFT ISPWKDSEEN VGSLLMVWRF  540
LISFSDALDL WPFTLDEFIQ AFHDYDSRLL GEIHITLLRS VIRDIEDVAR TPFSGIGNNQ  600
YTTANPEGGH PQIVEAAYAW GFDIRSWKKH LNPLTWPEIL RQLALSSGFG PRLKKKNSRL  660
THIGDKDEAK GCEDVISSIR SGSAAESAFA LMLEKGLLAP RKSRHRLTPG TVKFAAFHVL  720
SLEGSKGLTV LELADKIQKS GLRDLTTSKT PEASISVALT RDVKLFERIA PSTYCVRAPY  780
VKDPADGEAI LADARKKIRA FENGFTGPED VNDLERDEDF ECDIDEDPEV DDLATLASAS  840
KSADLGEAND LSGKGGDTLF CDAKADLKSE VDKEFSSLPP SSIKNIVPQC RGEQRKNTAV  900
CCVDDNNSVV EDSNQGQSWI QGLTEGDYCH LSVEERLEAL VALVGIANEG NSIRACLEDR  960
MEAANSLKKQ MWAEAQLDNS WMRDVHKLDF QSLSNNKTES TMGLQIIQSS TREMDSFDRD  1020
PSQLIDETKP LEVVMNDLHK PTTERAFINQ EANVSQENCS SKRSRSQLKS YIGHRAEEVY  1080
PYRSLPLGQD RRHNRYWHFA ASASKTEPCS GLLFVELHDG KWRLIDSEEA FDTLVASLDM  1140
RGIRESHLRI MLQKIEGSFK ENACKNIKLA RNPSLEEKSV VNHSPANSVS PCSAISGSNS  1200
DSMETSTSIR VELGRNNTEK ENLSKRFHYF QRWMWTETYS SLPSCARKYG KKRCELLATC  1260
EVCVASYLSE YTHCTSCHQR LDMADSSERK ILDSGLTASP LPFGVRLLKA LLVFLEASVP  1320
DEALESFWTE DKRKIWGFRL NVSSSPEELL QVLISLESAI KKESLSSNFV SAKELLGAAG  1380
ADDPGSVDVF PWIPKTVSAV ALRLLDLDAS VIYVKPEKPE PIPEDENEQI SLFPGNSLYK  1440
GKGPKEPEDQ DEVVPHSGKR SNKRRVSFGS GSNRKVKRKK VQGGPSRFVA GRNNVAVDRN  1500
LMSVELNHQV PGRGKRTVRK RPERNDEDNY RSVSRMADVI RAKSEEVEEE DAEEEEEEQT  1560
FRDIDEDWAD ETPREMDEDW ASETPNRVMT PMQVDDESDN SVGVESEDED DDDDGQFVDY  1620
NQRNKWGLDW NSNPNEAMED DEEEVVGVER VEREDVAEMS ESSEDDDVPA NNAAANNYDR  1680
DSEDYSSSDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18592RRLKDKKD
214621479KRRVSFGSGSNRKVKRKK
314721479NRKVKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g24700
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0101550.0AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415655.10.0homeobox-DDT domain protein RLT1 isoform X1
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLV4L2Q30.0V4L2Q3_EUTSA; Uncharacterized protein
STRINGXP_006415655.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83472236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1