PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g23590
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family SBP
Protein Properties Length: 394aa    MW: 43792.9 Da    PI: 8.7778
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g23590genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP125.81.8e-39173249177
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                +Cq++gCe dls+ak+yhr+h+vCe hsk+p v+v gle+rfCqqCsr h++sefDe+krsCr+rL++hn+rrrk+q
  Tp1g23590 173 RCQIDGCELDLSSAKDYHRKHRVCENHSKCPIVTVGGLERRFCQQCSRLHAVSEFDEKKRSCRKRLSHHNARRRKPQ 249
                6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.5E-32166235IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.65171248IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.58E-37172250IPR004333Transcription factor, SBP-box
PfamPF031103.4E-30174247IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010358Biological Processleaf shaping
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDCNMVSPMW DWEHLIMPNL SKTENDKKQP STEWEIEKGG GIESIFPCFA GLERVSSGST  60
TGFGHTAVSK SSQLTSTNSS SPKVKQTKLA SESSRGDSCS NIDFVQVKAS TALEVSVASA  120
ESDLCLKLGK RTYSEELWGR NNNDISAVSV KLLTPSLARK KSKSCGQSMQ VPRCQIDGCE  180
LDLSSAKDYH RKHRVCENHS KCPIVTVGGL ERRFCQQCSR LHAVSEFDEK KRSCRKRLSH  240
HNARRRKPQG VFPLNPERVY NRRQHTNMLW NGLSLNTRSD EKYTWDTTYD PKPTQTESGF  300
TLSFQRGNGA EEQLFASSNR SFSAYQTSGG FSAGKSNFQL PGKGVGEYSG GLHESQDFYS  360
ALSLLSTSSD SHGTKHHPMV ESQPIHGTFP THFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-251742471184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229246KKRSCRKRLSHHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g23590
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415770.10.0squamosa promoter-binding-like protein 10
RefseqXP_006415771.10.0squamosa promoter-binding-like protein 10
RefseqXP_024009069.10.0squamosa promoter-binding-like protein 10
SwissprotQ8S9L00.0SPL10_ARATH; Squamosa promoter-binding-like protein 10
TrEMBLA0A1J3I3G60.0A0A1J3I3G6_NOCCA; Squamosa promoter-binding-like protein 10
STRINGXP_006415770.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50041653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.40.0squamosa promoter binding protein-like 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu N,Niu QW,Ng KH,Chua NH
    The role of miR156/SPLs modules in Arabidopsis lateral root development.
    Plant J., 2015. 83(4): p. 673-85
    [PMID:26096676]
  3. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]
  4. Gao R,Wang Y,Gruber MY,Hannoufa A
    miR156/SPL10 Modulates Lateral Root Development, Branching and Leaf Morphology in Arabidopsis by Silencing AGAMOUS-LIKE 79.
    Front Plant Sci, 2017. 8: p. 2226
    [PMID:29354153]
  5. Dotto M,Gómez MS,Soto MS,Casati P
    UV-B radiation delays flowering time through changes in the PRC2 complex activity and miR156 levels in Arabidopsis thaliana.
    Plant Cell Environ., 2018. 41(6): p. 1394-1406
    [PMID:29447428]