PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g23580
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family SBP
Protein Properties Length: 394aa    MW: 44210 Da    PI: 8.3562
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g23580genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.92e-40175251177
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                +Cq++gCe dls+ k+yhr+h+vCe hsk+p+v+v+gle+rfCqqCsrfh++sefDe+krsCr+rL++hn+rrrk+q
  Tp1g23580 175 RCQIDGCELDLSSEKDYHRKHRVCENHSKSPKVIVNGLERRFCQQCSRFHAVSEFDETKRSCRKRLSHHNARRRKPQ 251
                6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.4E-34168237IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.282173250IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-37174251IPR004333Transcription factor, SBP-box
PfamPF031102.0E-31176249IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDCNMRSPLL WDLENLIMPN PSKTENDKKQ LTSEWEVEKG EGIESIFPCF NGLERVSNCS  60
TTSFWHTSVS KSSQSTSTNS SSPKVKQCKR ASESPLGDSC SNIDFVQVKA STALEVSVAS  120
AESDLSLKLG KRTYSEEFWG RNNNDISAVS VNLLTPPVAA RKKSKSSGQS MQVPRCQIDG  180
CELDLSSEKD YHRKHRVCEN HSKSPKVIVN GLERRFCQQC SRFHAVSEFD ETKRSCRKRL  240
SHHNARRRKP QGVFPFNQER VYDRRQHTNM LWNGLSLNTR SEEKFAWDSS TYDTKPTQTE  300
SGFTLSFQRG NGSEEQLLAS SNHSFSAYQT SGGFSAGKSK FQLHGEGVGE YSGVLHESQD  360
FHRALSLLST SSDPLVQSHS QPFSLLFSYD GVPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-261762491184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00161DAPTransfer from AT1G27360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g23580
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533920.0AK353392.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-42-E20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598135.10.0PREDICTED: squamosa promoter-binding-like protein 11
RefseqXP_013598136.10.0PREDICTED: squamosa promoter-binding-like protein 11
RefseqXP_013598137.10.0PREDICTED: squamosa promoter-binding-like protein 11
RefseqXP_013598138.10.0PREDICTED: squamosa promoter-binding-like protein 11
SwissprotQ9FZK00.0SPL11_ARATH; Squamosa promoter-binding-like protein 11
TrEMBLA0A397YJ760.0A0A397YJ76_BRACM; Uncharacterized protein
STRINGBo7g049950.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50041653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27360.40.0squamosa promoter-like 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Stief A, et al.
    Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors.
    Plant Cell, 2014. 26(4): p. 1792-1807
    [PMID:24769482]
  3. Liu J, et al.
    The RhoGAP SPIN6 associates with SPL11 and OsRac1 and negatively regulates programmed cell death and innate immunity in rice.
    PLoS Pathog., 2015. 11(2): p. e1004629
    [PMID:25658451]
  4. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]